OmicsML / dance

DANCE: a deep learning library and benchmark platform for single-cell analysis
https://pydance.readthedocs.io
BSD 2-Clause "Simplified" License
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build(deps): bump igraph from 0.10.6 to 0.10.8 #342

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps igraph from 0.10.6 to 0.10.8.

Release notes

Sourced from igraph's releases.

igraph 0.10.8

Yes, the version number is correct - igraph 0.10.7 has never made it to PyPI. It is tagged in the repository, but it has never been released officially. The changelog below lists the changes between igraph 0.10.6 and 0.10.8.

Added

  • Added is_bigraphical() to test whether a pair of integer sequences can be the degree sequence of some bipartite graph.

  • Added weights=... keyword argument to Graph.radius() and Graph.eccentricity().

  • Graph.distances(), Graph.get_shortest_path() and Graph.get_shortest_paths() now allow the user to select the algorithm to be used explicitly.

Changed

  • The C core of igraph was updated to version 0.10.7.

  • Graph.distances() now uses Dijkstra's algorithm when there are zero weights but no negative weights. Earlier versions switched to Bellman-Ford or Johnson in the presence of zero weights unnecessarily.

Fixed

  • Fixed a bug in EdgeSeq.select(_incident=...) for undirected graphs.

  • Fixed a memory leak in Graph.distances() when attempting to use Johnson's algorithm with mode != "out"

Changelog

Sourced from igraph's changelog.

[0.10.8] - 2023-09-12

Added

  • Added is_bigraphical() to test whether a pair of integer sequences can be the degree sequence of some bipartite graph.

  • Added weights=... keyword argument to Graph.radius() and Graph.eccentricity().

[0.10.7] - 2023-09-04

Added

  • Graph.distances(), Graph.get_shortest_path() and Graph.get_shortest_paths() now allow the user to select the algorithm to be used explicitly.

Changed

  • The C core of igraph was updated to version 0.10.7.

  • Graph.distances() now uses Dijkstra's algorithm when there are zero weights but no negative weights. Earlier versions switched to Bellman-Ford or Johnson in the presence of zero weights unnecessarily.

Fixed

  • Fixed a bug in EdgeSeq.select(_incident=...) for undirected graphs.

  • Fixed a memory leak in Graph.distances() when attempting to use Johnson's algorithm with mode != "out"

Commits
  • c61f7f0 chore: bumped version to 0.10.8
  • e624df9 feat: added weights=... argument to Graph.radius() and Graph.eccentricity()
  • b7d33f2 fix: added missing error handling to Graph.Random_Bipartite()
  • cddbc55 feat: exposed igraph_is_bigraphical(), closes #708
  • d3100c8 chore: bumped version to 0.10.7
  • 79fe9e6 refactor: use igraph_bipartite_game_gnp() or _gnm() instead of the deprecated...
  • f0287f5 fix: fix Pandas deprecation warning in unit tests, closes #705
  • a9c7d90 chore: updated changelog
  • f01bd6e chore: updated vendored C core
  • c5422ea Merge pull request #701 from igraph/dependabot/github_actions/pypa/cibuildwhe...
  • Additional commits viewable in compare view


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RemyLau commented 1 year ago

@dependabot squash and merge