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OmicsML / scDiff

scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
MIT License
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Enquiry about the data process #4

Closed EddieBio closed 2 months ago

EddieBio commented 8 months ago

Hi,

May I know how the authors process the data? For example, how do you normalize the data?

Thank you very much for your help.

WenzhuoTang commented 8 months ago

Hi @EddieBio , thank you for your interest in our work. For all the datasets, we applied the standard preprocessing pipeline: filtering out all-zero genes and cells, library size normalization with $\text{target sum} = 10000$, and then log1p normalization.