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OndrejSladky / kmercamel

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
MIT License
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AC optimization (reading fasta using kseq.h & slightly improved re-allocations) #36

Closed GordonHoklinder closed 1 year ago

GordonHoklinder commented 1 year ago

Also allocating the resulting superstring beforehand to decrease number of reallocations.

GordonHoklinder commented 1 year ago

38 includes improvements discussed in this PR and other