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OneZoom
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tree-build
Scripts for assembling the tree, metadata and downstream data products such as popularity and popular images
MIT License
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New get_wiki_images and process_image_bits commands
#63
davidebbo
opened
6 days ago
0
A few IUCN matching issues
#62
hyanwong
opened
1 month ago
1
Test cases for wikimedia harvesting/cropping
#61
hyanwong
opened
1 month ago
0
Change Kakapo
#60
hyanwong
closed
1 month ago
0
Popularity is broken when the wikidata entry points to a wikipedia redirect
#59
davidebbo
opened
1 month ago
9
Synonym popularity and a couple other things
#58
davidebbo
closed
1 month ago
0
Allocate length 0 from dog (subspecies) to wolf (species)
#57
hyanwong
closed
1 month ago
2
New tree does not have the correct species name for the dog
#56
hyanwong
closed
1 month ago
17
Kakapo is not picking up its Wikidata -> wikipedia entry
#55
hyanwong
closed
1 month ago
13
Fix tree 14.9
#54
hyanwong
closed
1 month ago
13
get_open_trees_from_one_zoom.py emits warnings for missing taxa even if bespoke versions exist in `OT_required`
#53
hyanwong
closed
1 month ago
19
Move oz_tree_build/tree_build/token_to_oz_tree_file_mapping.py to tree directory?
#52
hyanwong
opened
1 month ago
1
FAQ (or screening) for offensive vernacular names
#51
jrosindell
opened
1 month ago
5
Logic to parse wikipedia SQL dump file handles quotes incorrectly
#50
davidebbo
closed
1 month ago
1
Some key species end up with a raw popularity of zero
#49
davidebbo
closed
1 month ago
9
Switch to the newer wiki pageviews format
#48
davidebbo
closed
2 months ago
0
Round popularity numbers to two decimals
#47
davidebbo
opened
2 months ago
0
Add support for including ancestors in extract_trees
#46
davidebbo
closed
2 months ago
0
Using AI to extract Newick from images
#45
davidebbo
opened
5 months ago
6
Remove hardcoded metadata object
#44
lentinj
opened
5 months ago
3
Discuss possible ways of supporting extinct species
#43
davidebbo
opened
5 months ago
0
Scrape DOI links from bespoke files
#42
davidebbo
closed
2 months ago
8
Find Open Tree species that are missing from OneZoom
#41
davidebbo
opened
6 months ago
19
Add the rank to the ordered_nodes table
#40
davidebbo
closed
6 months ago
0
Add "rank" to the ordered nodes table
#39
davidebbo
closed
5 months ago
8
Harvesting vernacular names and images from wikidata
#38
hyanwong
opened
6 months ago
27
Add logic to both check and fix ultrametricity in bespoke files
#37
davidebbo
closed
6 months ago
0
Add option to print the OZ file tree structure
#36
davidebbo
closed
7 months ago
0
Fix ultrametricity is some bespoke files
#35
davidebbo
closed
7 months ago
3
Add .gitignore files to pre-create folders
#34
davidebbo
closed
7 months ago
0
Errors & restarting file generation
#33
hyanwong
closed
7 months ago
7
Keep all sitelinks for all languages
#32
davidebbo
closed
7 months ago
0
Discuss how to deal with non-extinct species from the fossil record
#31
davidebbo
closed
7 months ago
2
Fix incorrect escape sequence. Fixes #25
#30
davidebbo
closed
7 months ago
0
Missing taxa with new open tree (14.9)
#29
hyanwong
closed
1 month ago
7
Update README.markdown
#28
hyanwong
closed
7 months ago
1
Add locations for files
#27
hyanwong
closed
7 months ago
0
Update README.markdown to newest OpenTree
#26
hyanwong
closed
7 months ago
0
Minor test bug: deprecation warning for \D
#25
hyanwong
closed
7 months ago
7
Investigate why some popular species are missing a common name
#24
davidebbo
closed
7 months ago
14
Investigate whether to include site links for all languages in the filtered Wikipedia dump
#23
davidebbo
closed
7 months ago
10
Don't percolate very low ages. Fixes #18
#22
davidebbo
closed
7 months ago
1
Reformat file
#21
davidebbo
closed
7 months ago
1
Remove unused packages and fix typo
#20
davidebbo
closed
7 months ago
0
Common ancestor of Whale Shark and some other species have an age which is abnormally low
#19
davidebbo
closed
7 months ago
1
Errors in some interior node dates
#18
jrosindell
closed
6 months ago
23
Possible bug in existing tree build pipeline related to monophyletic genera with named nodes
#17
jrosindell
opened
9 months ago
1
Add functional test for the filtering logic
#16
davidebbo
closed
1 year ago
0
Order for generating the filtered files
#15
hyanwong
opened
1 year ago
9
Update README.markdown
#14
hyanwong
closed
1 year ago
0
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