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OntoZoo / ontobee

Ontobee is a linked data server for ontologies. See: http://www.ontobee.org.
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BTO ontology removed? #105

Closed kcincode closed 7 years ago

kcincode commented 7 years ago

I was trying to get to http://www.ontobee.org/ontology/BTO?iri=http://purl.obolibrary.org/obo/BTO_0000089 and I was working a bit ago but now it is not found. Also it seems that there are no BTO ontology entries in your list.

Has this been removed for some reason?

e4ong1031 commented 7 years ago

Hi @kcin1018, Ontobee RDF database recently updated to a newer version, and all ontologies were re-uploaded based on the PURL links given by OBO foundry. According to the registry data, the BTO PURL link returns "404 Not Found" error. Could you double check if the PURL link is valid? We can update the BTO once the PURL is resolved.

Thanks.

kcincode commented 7 years ago

Hmmm, I am pretty new to this stuff and not sure what the BTO PURL link is or how to go about fixing/requesting a fix for it...

I'll try to look into it.

e4ong1031 commented 7 years ago

The PURL would be this link: http://purl.obolibrary.org/obo/bto.owl.

As an alternative, we can also load an ontology with a working URL to the ontology file. For example, the ontology OAE owl file can be found in this link: http://svn.code.sf.net/p/oae/code/trunk/src/ontology/oae.owl

cmungall commented 7 years ago

To suggest edits for any metadata for an ontology registered with OBO, go to the home page for that ontology: http://obofoundry.org/ontology/bto.html

And click to edit. For the purl, click where it says "PURL". You can make a pull request with an edit with the new location. Sorry this is not well documented. If you add tickets to the obo tracker people will help you: https://github.com/OBOFoundry/OBOFoundry.github.io/issues

@e4ong1031 - ontobee should always use the PURLs for OBO ontologies, let's not create forked registries.

On 10 Mar 2017, at 8:53, e4ong1031 wrote:

The PURL would be this link: http://purl.obolibrary.org/obo/bto.owl.

As an alternative, we can also load an ontology with a working URL to the ontology file. For example, the ontology OAE owl file can be found in this link: http://svn.code.sf.net/p/oae/code/trunk/src/ontology/oae.owl

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cmungall commented 7 years ago

Questions on BTO should be followed up here: https://github.com/OBOFoundry/OBOFoundry.github.io/issues/381

BTO folks will need to fix the syntax error before it can be loaded into ontobee

This ticket can be closed.

e4ong1031 commented 7 years ago

I uploaded the old version of BTO. versionIRI = http://purl.obolibrary.org/obo/bto/releases/2016-05-05/bto.owl

BTO will be automatically updated once https://github.com/OBOFoundry/OBOFoundry.github.io/issues/381 is resolved.