search

OntoZoo / ontobee

Ontobee is a linked data server for ontologies. See: http://www.ontobee.org.
27 stars 5 forks source link

URIs as annotation values not showing up #13

Open cmungall opened 10 years ago

cmungall commented 10 years ago

Example: http://purl.obolibrary.org/obo/UBERON_0001882

The database_cross_references field shows all values of this property that are literals.

but not IRIs. Underlying OWL:

   <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001882">
...
        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nucleus accumbens</rdfs:label>
         <oboInOwl:hasDbXref rdf:resource="http://braininfo.rprc.washington.edu/centraldirectory.aspx?ID=277"/>
        <oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Nucleus_accumbens"/>
        <oboInOwl:hasDbXref rdf:resource="http://ncicb.nci.nih.gov/xml/owl/EVS/Accumbens_Nucleus"/>
        <oboInOwl:hasDbXref rdf:resource="http://uri.neuinfo.org/nif/nifstd/birnlex_727"/>
ontoden commented 10 years ago

I see. We will try to fix this soon.

Interestingly, the page of the example also includes figure image reference:

Probably we can try to use this example to show the image.

Thanks,

Oliver

From: Chris Mungall [notifications@github.com] Sent: Thursday, May 15, 2014 9:19 PM To: ontoden/ontobee Subject: [ontobee] URIs as annotation values not showing up (#13)

Example: http://purl.obolibrary.org/obo/UBERON_0001882

The database_cross_references field shows all values of this property that are literals.

but not IRIs. Underlying OWL:

... nucleus accumbens/rdfs:label — Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13. --- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues
cmungall commented 10 years ago

Images would be great

There's something odd to do with the character escaping in this example

On 15 May 2014, at 18:37, ontoden wrote:

I see. We will try to fix this soon.

Interestingly, the page of the example also includes figure image reference:

<foaf:depicted_by rdf:resource="http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg"/>

Probably we can try to use this example to show the image.

Thanks,

Oliver

From: Chris Mungall [notifications@github.com] Sent: Thursday, May 15, 2014 9:19 PM To: ontoden/ontobee Subject: [ontobee] URIs as annotation values not showing up (#13)

Example: http://purl.obolibrary.org/obo/UBERON_0001882

The database_cross_references field shows all values of this property that are literals.

but not IRIs. Underlying OWL:

... nucleus accumbens/rdfs:label — Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13. --- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues --- Reply to this email directly or view it on GitHub: https://github.com/ontoden/ontobee/issues/13#issuecomment-43286751
ontoden commented 10 years ago

Hi Chris,

Bin in my lab has made it happen: now we can see the images in Ontobee:

http://www.ontobee.org/browser/rdf.php?o=UBERON&iri=http://purl.obolibrary.org/obo/UBERON_0001882 more examples: http://purl.obolibrary.org/obo/UBERON_0001874 http://purl.obolibrary.org/obo/UBERON_0001875 http://purl.obolibrary.org/obo/UBERON_0002741

The other issue about the database_cross_references has also seen solved.

Please check out.

Best,

Oliver

From: Chris Mungall [mailto:notifications@github.com] Sent: Friday, May 16, 2014 12:18 AM To: ontoden/ontobee Cc: ontoden Subject: Re: [ontobee] URIs as annotation values not showing up (#13)

Images would be great

There's something odd to do with the character escaping in this example

On 15 May 2014, at 18:37, ontoden wrote:

I see. We will try to fix this soon.

Interestingly, the page of the example also includes figure image reference:

<foaf:depicted_by rdf:resource="http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg"/>

Probably we can try to use this example to show the image.

Thanks,

Oliver

From: Chris Mungall [notifications@github.com] Sent: Thursday, May 15, 2014 9:19 PM To: ontoden/ontobee Subject: [ontobee] URIs as annotation values not showing up (#13)

Example: http://purl.obolibrary.org/obo/UBERON_0001882

The database_cross_references field shows all values of this property that are literals.

but not IRIs. Underlying OWL:

... nucleus accumbens/rdfs:label — Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13. --- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues --- Reply to this email directly or view it on GitHub: https://github.com/ontoden/ontobee/issues/13#issuecomment-43286751

— Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13#issuecomment-43295305.

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

ontoden commented 10 years ago

Great work Bin! Very nice!

I see there are duplicates but this is a problem on my end, will fix.

On 19 May 2014, at 12:28, He, Yongqun wrote:

Hi Chris,

Bin in my lab has made it happen: now we can see the images in Ontobee:

http://www.ontobee.org/browser/rdf.php?o=UBERON&iri=http://purl.obolibrary.org/obo/UBERON_0001882 more examples: http://purl.obolibrary.org/obo/UBERON_0001874 http://purl.obolibrary.org/obo/UBERON_0001875 http://purl.obolibrary.org/obo/UBERON_0002741

The other issue about the database_cross_references has also seen solved.

Please check out.

Best,

Oliver

From: Chris Mungall [mailto:notifications@github.com] Sent: Friday, May 16, 2014 12:18 AM To: ontoden/ontobee Cc: ontoden Subject: Re: [ontobee] URIs as annotation values not showing up (#13)

Images would be great

There's something odd to do with the character escaping in this example

  • try cerebellum for an image that works

On 15 May 2014, at 18:37, ontoden wrote:

I see. We will try to fix this soon.

Interestingly, the page of the example also includes figure image reference:

<foaf:depicted_by rdf:resource="http://upload.wikimedia.org/wikipedia/commons/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg"/>

Probably we can try to use this example to show the image.

Thanks,

Oliver

From: Chris Mungall [notifications@github.com] Sent: Thursday, May 15, 2014 9:19 PM To: ontoden/ontobee Subject: [ontobee] URIs as annotation values not showing up (#13)

Example: http://purl.obolibrary.org/obo/UBERON_0001882

The database_cross_references field shows all values of this property that are literals.

but not IRIs. Underlying OWL:

... nucleus accumbens/rdfs:label — Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13. --- Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues --- Reply to this email directly or view it on GitHub: https://github.com/ontoden/ontobee/issues/13#issuecomment-43286751

— Reply to this email directly or view it on GitHubhttps://github.com/ontoden/ontobee/issues/13#issuecomment-43295305.

Electronic Mail is not secure, may not be read every day, and should not be used for urgent or sensitive issues

You received this message because you are subscribed to the Google Groups "Ontobee-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to ontobee-discuss+unsubscribe@googlegroups.com. For more options, visit https://groups.google.com/d/optout.