[BUG] TO links are broken

[Hannah-Doerpholz]

This relates to the issues #185 , #202 and #203 . None of the TO purls resolve correctly, I always get redirected to the "Term Not Found" page. When I navigate to TO through your home page it does show me the classes but when I click them I get redirected to the "Term Not Found" page.

[LilyAndres]

Any updates on this? I am having some issues to open this as well.

https://ontobee.org/ontology/TO?iri=http://purl.obolibrary.org/obo/TO_0000439

[yongqunh]

Hi Liliana,

I see. Will check into it ...

My quick check found that TO owl file (http://purl.obolibrary.org/obo/to.owl) is not a merged version. I think Ontobee usually can handle this situation. However, it would be better to make it a merged version.

Thanks, Oliver

From: Liliana Andres @.> Sent: Tuesday, May 21, 2024 11:46 PM To: OntoZoo/ontobee @.> Cc: Subscribed @.***> Subject: Re: [OntoZoo/ontobee] [BUG] TO links are broken (Issue #204)

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Any updates on this? I am having some issues to open this as well.

https://ontobee.org/ontology/TO?iri=http://purl.obolibrary.org/obo/TO_0000439

Screenshot.2024-05-22.at.1.13.17.pm.png (view on web)https://github.com/OntoZoo/ontobee/assets/25215773/d823ca9e-3c00-43ed-aca3-3f0610448aa4

- Reply to this email directly, view it on GitHubhttps://github.com/OntoZoo/ontobee/issues/204#issuecomment-2123812208, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ABD22QZEZ7QQ45EOH42YMVTZDQIF7AVCNFSM6AAAAABGPAIT2KVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMRTHAYTEMRQHA. You are receiving this because you are subscribed to this thread.Message ID: @.**@.>>

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[cooperl09]

@LilyAndres If you want to browse the latest versions of our ontologies, you can do so at https://dev.planteome.org/amigo Downloads are available in GitHub or at OboFoundry

@yongqunh I am not familiar with what you mean by "merged version". Do you have a link to any information about that? This version resolves fine on our Amigo browser and at other sites, such as EBI-OLS and Bioportal. Thanks!

[ontoden]

OK. It appears working now: https://ontobee.org/ontology/TO

The meaning of merged version: As seen here: https://raw.githubusercontent.com/Planteome/plant-trait-ontology/master/to.owl you have many imported files: @.***

It appears that the contents of these imports are not merged physically into the TO.owl file. It would be better to form a merged version.

Best, Oliver

From: Laurel Cooper @.> Sent: Wednesday, May 22, 2024 5:02 PM To: OntoZoo/ontobee @.> Cc: Subscribed @.***> Subject: Re: [OntoZoo/ontobee] [BUG] TO links are broken (Issue #204)

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@LilyAndreshttps://github.com/LilyAndres If you want to browse the latest versions of our ontologies, you can do so at https://dev.planteome.org/amigo Downloads are available in GitHub or at OboFoundry

@yongqunhhttps://github.com/yongqunh I am not familiar with what you mean by "merged version". Do you have a link to any information about that? This version resolves fine on our Amigo browser and at other sites, such as EBI-OLS and Bioportal. Thanks!

- Reply to this email directly, view it on GitHubhttps://github.com/OntoZoo/ontobee/issues/204#issuecomment-2125736457, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ABPQBGMKWSHEYFQIVIGOEFLZDUBS5AVCNFSM6AAAAABGPAIT2KVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCMRVG4ZTMNBVG4. You are receiving this because you are subscribed to this thread.Message ID: @.**@.>>

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