search

OntoZoo / ontobee

Ontobee is a linked data server for ontologies. See: http://www.ontobee.org.
27 stars 5 forks source link

Issue with BFO versions #68

Open mcourtot opened 8 years ago

mcourtot commented 8 years ago

The page http://www.ontobee.org/ontology/APOLLO_SV?iri=http://purl.obolibrary.org/obo/BFO_0000108 shows a relation coming from BFO, but trying to get to the source IRI http://purl.obolibrary.org/obo/BFO_0000108 is "not found"

This is probably due to different versions of BFO - exists at is not int the "official" BFO 2.0

donpellegrino commented 7 years ago

In addition the Ontobee page at http://www.ontobee.org/ontology/BFO lists an annotation reading "comment: This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. ..." However, BFO 2 has been officially released and no longer contains this comment. It seems Ontobee is not using the latest version of BFO.

e4ong1031 commented 7 years ago

I checked the Ontobee update script, and it was using the http://purl.obolibrary.org/obo/bfo.owl for BFO source file. This PURL link redirects to https://raw.githubusercontent.com/BFO-ontology/BFO/v2.0/bfo.owl, which should be the latest BFO 2.0 release.

In addition, the following definition still exists in that OWL file: <rdfs:comment xml:lang="en">This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. Please see the project site http://code.google.com/p/bfo/ , the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel , the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx . This ontology is generated from a specification at http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/ and with the code that generates the OWL version in http://bfo.googlecode.com/svn/trunk/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif</rdfs:comment>

donpellegrino commented 7 years ago

It looks like the PURL link is redirecting to the "v2.0" tag of the GitHub repository for BFO (https://github.com/BFO-ontology/BFO). The comment text has been updated in master.

Would this be an update for the BFO GitHub repository maintainers or for the PURL link maintainer?