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Open-Science-Tools
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nd2reader
Pure Python library for reading NIS Elements ND2 images and metadata
http://www.lighthacking.nl/nd2reader
GNU General Public License v3.0
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Apple Silicon Error (pims_nd2)
#71
henriquenunez
opened
5 months ago
0
Replace Deprecated np.float with np.float64 in nd2reader
#70
mansouralawi
opened
9 months ago
2
Error: 'numpy' Module Has No Attribute 'float' in nd2reader
#69
mansouralawi
opened
9 months ago
1
fixes DeprecationWarning for newer numpy versions
#68
vinsfan368
opened
1 year ago
0
in numpy ver1.24+, the numpy.float is deprecated, please fix it...
#67
zhouchunyuan
opened
1 year ago
0
Wrong z parameter in Focused EDF files
#66
BennyGinger
opened
1 year ago
0
pull out the label dXPos/dYPos and dPosX/dPosY
#65
TanviDeora
opened
1 year ago
0
float64 .nd2 files don't recognize intensities above 2**16-1
#64
joaomamede
opened
2 years ago
0
parser.calculate_image_properties breaks if "z_levels" are empty
#63
alonyan
opened
2 years ago
0
Cannot open nd2 files obtained with version 5.21.03 of the acquisition software
#62
GiorgiaTortora
opened
2 years ago
0
documentation link is broken
#61
loganfred
closed
2 years ago
1
Fix a bug with parsing stitched images.
#60
zjniu
closed
2 years ago
1
Fix a bug of parsing channel validity
#59
hayatoikoma
opened
2 years ago
3
Add XY metadata
#58
joaomamede
opened
2 years ago
2
Improving metadata: Add X and Y stage coordinates in Metadata.
#57
joaomamede
opened
2 years ago
3
nd2reader outputs empty arrays for certain ND2 files.
#56
zjniu
closed
2 years ago
2
git-lfs in the repo pointing to missing objects
#55
zolfariot
opened
2 years ago
1
reading from files being written
#54
joaomamede
opened
3 years ago
4
Single time point exported from time series appears to have as many frames as original
#53
jni
opened
3 years ago
1
Colors wrong when saving ND2 to png
#52
LordKnish
opened
3 years ago
9
Build error on Travis due to SSH git url for docs
#51
rbnvrw
opened
3 years ago
1
Bug in attempt to remove unwanted bytes
#50
guiwitz
closed
3 years ago
1
Loaded images are gray scale
#49
aknckaan
opened
3 years ago
2
KeyError when opening nd2 file
#48
dkeekstra
closed
3 years ago
1
Plotting ROI's from nd2 files
#47
ninning
opened
3 years ago
4
wrong number of z plane / time points
#46
jboulanger
opened
3 years ago
2
Issue to open stitched RGB nd2 files (related to issue #17)
#45
bioimage-analysis
opened
3 years ago
1
DTYPE not properly parsed [NotImplemented]
#44
ggirelli
opened
3 years ago
2
Fixed missing filename path.
#43
ggirelli
closed
3 years ago
1
VERSION handling in setup.py breaks some automatic tools
#42
ggirelli
closed
3 years ago
3
[ERROR] Library not working in Windows
#41
WaterKnight1998
closed
3 years ago
2
Removed empty bytes at channel subchunk ends for issue #31
#40
ggirelli
closed
3 years ago
4
Update to reader.py for issue #35
#39
ggirelli
closed
4 years ago
6
Bad reader sizes are parsed.
#38
joaomamede
opened
4 years ago
1
default_coords fails for t (always stuck at time 0)
#37
joaomamede
closed
4 years ago
1
More metadata?
#36
joaomamede
opened
4 years ago
7
Is it possible to read from a io.BytesIO or io.StringIO or just accepts filename?
#35
WaterKnight1998
opened
4 years ago
2
Z coord of Timepoint seen as Z steps
#34
bioimage-analysis
closed
4 years ago
9
Removed self.__class__ from super() call
#33
ggirelli
closed
4 years ago
5
add a check that filename passed to ND2Reader has extension .nd2
#32
ulugbekna
closed
4 years ago
3
Cannot open certain stitched .nd2 files from Elements
#31
ColinDTaylor
opened
4 years ago
15
Create CODE_OF_CONDUCT.md
#30
rbnvrw
closed
4 years ago
0
ND2Reader gets incorrect video length for cut movies with NISElements
#29
TeaWolf
opened
4 years ago
2
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch
#28
ggirelli
closed
4 years ago
1
Z-axis of large ND2 image not properly parsed.
#27
ggirelli
closed
4 years ago
4
Parsing point name in nd2
#26
hftsai
opened
4 years ago
5
in 3.2.0, get_frame_2D fails
#25
tsvikas
closed
4 years ago
3
In 3.2.0, get_frame_vczyx() implementation breaks functionality
#24
WMAPernice
closed
4 years ago
7
Error while parsing partially saved nd2 files
#23
bellonet
opened
4 years ago
3
Fix to allow reading of ND2-files with missing frames.
#22
WMAPernice
closed
4 years ago
1
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