Open-Science-Tools nd2reader issues

Open-Science-Tools / nd2reader

Pure Python library for reading NIS Elements ND2 images and metadata

http://www.lighthacking.nl/nd2reader

GNU General Public License v3.0

45 stars 28 forks source link

issues

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Apple Silicon Error (pims_nd2)

#71 henriquenunez opened 5 months ago
0
Replace Deprecated np.float with np.float64 in nd2reader

#70 mansouralawi opened 9 months ago
2
Error: 'numpy' Module Has No Attribute 'float' in nd2reader

#69 mansouralawi opened 9 months ago
1
fixes DeprecationWarning for newer numpy versions

#68 vinsfan368 opened 1 year ago
0
in numpy ver1.24+, the numpy.float is deprecated, please fix it...

#67 zhouchunyuan opened 1 year ago
0
Wrong z parameter in Focused EDF files

#66 BennyGinger opened 1 year ago
0
pull out the label dXPos/dYPos and dPosX/dPosY

#65 TanviDeora opened 1 year ago
0
float64 .nd2 files don't recognize intensities above 2**16-1

#64 joaomamede opened 2 years ago
0
parser.calculate_image_properties breaks if "z_levels" are empty

#63 alonyan opened 2 years ago
0
Cannot open nd2 files obtained with version 5.21.03 of the acquisition software

#62 GiorgiaTortora opened 2 years ago
0
documentation link is broken

#61 loganfred closed 2 years ago
1
Fix a bug with parsing stitched images.

#60 zjniu closed 2 years ago
1
Fix a bug of parsing channel validity

#59 hayatoikoma opened 2 years ago
3
Add XY metadata

#58 joaomamede opened 2 years ago
2
Improving metadata: Add X and Y stage coordinates in Metadata.

#57 joaomamede opened 2 years ago
3
nd2reader outputs empty arrays for certain ND2 files.

#56 zjniu closed 2 years ago
2
git-lfs in the repo pointing to missing objects

#55 zolfariot opened 2 years ago
1
reading from files being written

#54 joaomamede opened 3 years ago
4
Single time point exported from time series appears to have as many frames as original

#53 jni opened 3 years ago
1
Colors wrong when saving ND2 to png

#52 LordKnish opened 3 years ago
9
Build error on Travis due to SSH git url for docs

#51 rbnvrw opened 3 years ago
1
Bug in attempt to remove unwanted bytes

#50 guiwitz closed 3 years ago
1
Loaded images are gray scale

#49 aknckaan opened 3 years ago
2
KeyError when opening nd2 file

#48 dkeekstra closed 3 years ago
1
Plotting ROI's from nd2 files

#47 ninning opened 3 years ago
4
wrong number of z plane / time points

#46 jboulanger opened 3 years ago
2
Issue to open stitched RGB nd2 files (related to issue #17)

#45 bioimage-analysis opened 3 years ago
1
DTYPE not properly parsed [NotImplemented]

#44 ggirelli opened 3 years ago
2
Fixed missing filename path.

#43 ggirelli closed 3 years ago
1
VERSION handling in setup.py breaks some automatic tools

#42 ggirelli closed 3 years ago
3
[ERROR] Library not working in Windows

#41 WaterKnight1998 closed 3 years ago
2
Removed empty bytes at channel subchunk ends for issue #31

#40 ggirelli closed 3 years ago
4
Update to reader.py for issue #35

#39 ggirelli closed 4 years ago
6
Bad reader sizes are parsed.

#38 joaomamede opened 4 years ago
1
default_coords fails for t (always stuck at time 0)

#37 joaomamede closed 4 years ago
1
More metadata?

#36 joaomamede opened 4 years ago
7
Is it possible to read from a io.BytesIO or io.StringIO or just accepts filename?

#35 WaterKnight1998 opened 4 years ago
2
Z coord of Timepoint seen as Z steps

#34 bioimage-analysis closed 4 years ago
9
Removed self.__class__ from super() call

#33 ggirelli closed 4 years ago
5
add a check that filename passed to ND2Reader has extension .nd2

#32 ulugbekna closed 4 years ago
3
Cannot open certain stitched .nd2 files from Elements

#31 ColinDTaylor opened 4 years ago
15
Create CODE_OF_CONDUCT.md

#30 rbnvrw closed 4 years ago
0
ND2Reader gets incorrect video length for cut movies with NISElements

#29 TeaWolf opened 4 years ago
2
Using Z slice coordinates from Z-data instead of Z-levels and show warning in case of mismatch

#28 ggirelli closed 4 years ago
1
Z-axis of large ND2 image not properly parsed.

#27 ggirelli closed 4 years ago
4
Parsing point name in nd2

#26 hftsai opened 4 years ago
5
in 3.2.0, get_frame_2D fails

#25 tsvikas closed 4 years ago
3
In 3.2.0, get_frame_vczyx() implementation breaks functionality

#24 WMAPernice closed 4 years ago
7
Error while parsing partially saved nd2 files

#23 bellonet opened 4 years ago
3
Fix to allow reading of ND2-files with missing frames.

#22 WMAPernice closed 4 years ago
1