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How to run PBPK model to simulate drug concentration of a real patient (using CLI) #623

Closed lamnvcnsh closed 3 years ago

lamnvcnsh commented 4 years ago

Dear everyone,

I would like to ask you a question related to running simulation using CLI as an example bellow.

  1. I downloaded a PBPK project (efavirenz from OPS-PBPK-Model-Library), in this project, I can see a few pre-defined individuals based on previous papers.
  2. In the graphic user interface (GUI), I could create a new individual (such as real individual information), then I could run a simulation for this individual.
  3. My question is how I can do simulation and get the results with CLI instead of GUI if I have a PBPK model, pre-defined protocol (for simulation), and individual information.
  4. If yes, how can I prepare as input data for simulation?

I am a newbie, so sorry if it is a silly question. Thank you very much.

msevestre commented 4 years ago

You should use the ospsuite-r for this. The CLI is used to run preexisting projects or snapshots but there is no scripting capabilities.

See the OSPSuite-r repository for more information on setup and getting started

lamnvcnsh commented 4 years ago

Thank @msevestre so much for your information. I will try with OSPSuite-r, then let you known if I have any issue.

msevestre commented 4 years ago

Sounds good. Good luck @lamnvcnsh