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Open-Systems-Pharmacology / OSPSuite.ReportingEngine

R implementation of the reporting engine
https://www.open-systems-pharmacology.org/OSPSuite.ReportingEngine/
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Error "<Project Name>" not included in 'project' variable of simulationMappings. #698

Closed Yuri05 closed 2 years ago

Yuri05 commented 2 years ago

Tried to run the DDI-UGT qualification workflow with the RE-Code from the PR Apply runSimulations of sequence of subsets of structureSets Here is the input: Qualification.zip

> source("workflow.R", encoding="UTF-8")
> createQualificationReport(qualificationRunnerFolder = "C:/QualificationRunner_11.0.68", pkSimPortableFolder = "C:/PK-Sim_11.0.72")

Workflow run failed with the error:

Error in validateIsIncludedAndLog(project, private$.simulationMappings$project,  : 
  In createQualificationReport:
'Atazanavir-Raltegravir-DDI' is not included in 'project' variable of simulationMappings.
In addition: Warning message:
In (function (value)  :
 Error in validateIsIncludedAndLog(project, private$.simulationMappings$project,  : 
  In createQualificationReport:
'Atazanavir-Raltegravir-DDI' is not included in 'project' variable of simulationMappings.
Full console output ``` info: QualificationRunner[0] Starting qualification workflow info: QualificationRunner[0] Starting validation runs... info: QualificationRunner[0] Starting qualification runs... info: QualificationRunner[0] Qualification scenario finished in 06m:05s:994ms info: QualificationRunner[0] Qualification Workflow finished [1] "Qualification Runner Duration: 6.3 minutes" Creating output objects for 1/65: Project 'Mefenamic_acid' - Simulation 'PO MD 500 mg loading / 250 mg every 6 h' Creating output objects for 2/65: Project 'Mefenamic_acid' - Simulation 'PO SD 250 mg' Creating output objects for 3/65: Project 'Mefenamic_acid' - Simulation 'PO SD 500 mg' Creating output objects for 4/65: Project 'Dapagliflozin' - Simulation 'IV 0.08 mg (perm)' Creating output objects for 5/65: Project 'Dapagliflozin' - Simulation 'PO SD 10 mg (perm)' Creating output objects for 6/65: Project 'Dapagliflozin' - Simulation 'PO SD 50 mg (perm)' Creating output objects for 7/65: Project 'Dapagliflozin' - Simulation 'PO SD 2.5 mg (perm)' Creating output objects for 8/65: Project 'Dapagliflozin' - Simulation 'PO SD 5 mg (perm)' Creating output objects for 9/65: Project 'Dapagliflozin' - Simulation 'PO SD 20 mg (perm)' Creating output objects for 10/65: Project 'Dapagliflozin' - Simulation 'PO SD 100 mg (perm)' Creating output objects for 11/65: Project 'Dapagliflozin' - Simulation 'PO SD 250 mg (perm)' Creating output objects for 12/65: Project 'Dapagliflozin' - Simulation 'PO SD 500 mg (perm)' Creating output objects for 13/65: Project 'Dapagliflozin' - Simulation 'PO SD 5 mg IC tablet (Chang 2015) (perm)' Creating output objects for 14/65: Project 'Dapagliflozin' - Simulation 'PO SD 250 mg fed (perm)' Creating output objects for 15/65: Project 'Dapagliflozin' - Simulation 'PO SD 10 mg IC tablet (Chang 2015) (perm)' Creating output objects for 16/65: Project 'Dapagliflozin' - Simulation 'PO MD 10 mg (perm)' Creating output objects for 17/65: Project 'Dapagliflozin' - Simulation 'PO MD 100 mg (perm)' Creating output objects for 18/65: Project 'Dapagliflozin' - Simulation 'PO MD 2.5 mg (perm)' Creating output objects for 19/65: Project 'Dapagliflozin' - Simulation 'PO MD 20 mg (perm)' Creating output objects for 20/65: Project 'Dapagliflozin' - Simulation 'PO MD 50 mg (perm)' Creating output objects for 21/65: Project 'Raltegravir' - Simulation 'Raltegravir 800 mg (lactose formulation)' Creating output objects for 22/65: Project 'Raltegravir' - Simulation 'Raltegravir 10 mg (lactose formulation)' Creating output objects for 23/65: Project 'Raltegravir' - Simulation 'Raltegravir 100 mg (lactose formulation)' Creating output objects for 24/65: Project 'Raltegravir' - Simulation 'Raltegravir 1200 mg (lactose formulation)' Creating output objects for 25/65: Project 'Raltegravir' - Simulation 'Raltegravir 1600 mg (lactose formulation)' Creating output objects for 26/65: Project 'Raltegravir' - Simulation 'Raltegravir 200 mg (lactose formulation)' Creating output objects for 27/65: Project 'Raltegravir' - Simulation 'Raltegravir 25 mg (lactose formulation)' Creating output objects for 28/65: Project 'Raltegravir' - Simulation 'Raltegravir 50 mg (lactose formulation)' Creating output objects for 29/65: Project 'Raltegravir' - Simulation 'Raltegravir 400mg chewable fasted' Creating output objects for 30/65: Project 'Raltegravir' - Simulation 'Raltegravir 400mg filmcoated tablet' Creating output objects for 31/65: Project 'Raltegravir' - Simulation 'Raltegravir 400mg (lactose formulation)' Creating output objects for 32/65: Project 'Raltegravir' - Simulation 'Raltegravir 100 mg filmcoated tablet md' Creating output objects for 33/65: Project 'Raltegravir' - Simulation 'Raltegravir 200 mg filmcoated tablet md' Creating output objects for 34/65: Project 'Raltegravir' - Simulation 'Raltegravir 400 mg filmcoated tablet md' Creating output objects for 35/65: Project 'Raltegravir' - Simulation 'Raltegravir 400mg (granules in suspension)' Creating output objects for 36/65: Project 'Raltegravir' - Simulation 'Raltegravir 400mg chewable fed' Creating output objects for 37/65: Project 'Atazanavir' - Simulation 'Acosta2007_300mg' Creating output objects for 38/65: Project 'Atazanavir' - Simulation 'Agarwala2003_400mg' Creating output objects for 39/65: Project 'Atazanavir' - Simulation 'Agarwala2005a_400mg' Creating output objects for 40/65: Project 'Atazanavir' - Simulation 'Agarwala2005b_400mg' Creating output objects for 41/65: Project 'Atazanavir' - Simulation 'Martin2008_400mg' Creating output objects for 42/65: Project 'Atazanavir' - Simulation 'Zhu2011_400mg' Creating output objects for 43/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-014_400mg_YoungFemales' Creating output objects for 44/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-028_200mg' Creating output objects for 45/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-028_400mg' Creating output objects for 46/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-040_200mg' Creating output objects for 47/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-040_400mg' Creating output objects for 48/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-040_800mg' Creating output objects for 49/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-056_300mg' Creating output objects for 50/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-076_400mg' Creating output objects for 51/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-076_800mg' Creating output objects for 52/65: Project 'Atazanavir' - Simulation 'Zhu2010_300mg_Atazanavir' Creating output objects for 53/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-004_400mg_TreatmentA' Creating output objects for 54/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-014_400mg_YoungMales' Creating output objects for 55/65: Project 'Atazanavir' - Simulation 'FDA-ClinPharmReview_AI424-015_400mg_NormalSubjects' Creating output objects for 56/65: Project 'Mefenamic_acid-Dapagliflozin-DDI' - Simulation 'DDI Control - Dapagliflozin - Kasichayanula 2013a' Creating output objects for 57/65: Project 'Mefenamic_acid-Dapagliflozin-DDI' - Simulation 'DDI Treatment - Mefenamic acid/Dapagliflozin - Kasichayanula 2013a' Creating output objects for 58/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Iwamoto2008_Raltegravir' Creating output objects for 59/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Iwamoto2008_Raltegravir+Atazanavir' Creating output objects for 60/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Krishna2016_Raltegravir' Creating output objects for 61/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Krishna2016_Raltegravir+Atazanavir' Creating output objects for 62/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Neely2010_Raltegravir' Creating output objects for 63/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Neely2010_Raltegravir+Atazanavir' Creating output objects for 64/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Zhu2010_Raltegravir' Creating output objects for 65/65: Project 'Atazanavir-Raltegravir-DDI' - Simulation 'Zhu2010_Raltegravir+Atazanavir' [1] "10/02/2022 - 14:10:22 : Reporting Engine Information:" "10/02/2022 - 14:10:22 : Date: 10/02/2022 - 14:10:22" [3] "10/02/2022 - 14:10:22 : User Information:" "10/02/2022 - 14:10:22 : Computer Name: WDEC030620" [5] "10/02/2022 - 14:10:22 : User: ZTSOJ" "10/02/2022 - 14:10:22 : Login: ZTSOJ" [7] "10/02/2022 - 14:10:22 : System is NOT validated" "10/02/2022 - 14:10:22 : System versions:" [9] "10/02/2022 - 14:10:22 : R version: R version 3.6.3 (2020-02-29)" "10/02/2022 - 14:10:22 : OSP Suite Package version: 11.0.47" [11] "10/02/2022 - 14:10:22 : OSP Reporting Engine version: 1.2.123" "10/02/2022 - 14:10:22 : tlf version: 1.2.41" Error in validateIsIncludedAndLog(project, private$.simulationMappings$project, : In createQualificationReport: 'Atazanavir-Raltegravir-DDI' is not included in 'project' variable of simulationMappings. In addition: Warning message: In (function (value) : Error in validateIsIncludedAndLog(project, private$.simulationMappings$project, : In createQualificationReport: 'Atazanavir-Raltegravir-DDI' is not included in 'project' variable of simulationMappings. ```
Yuri05 commented 2 years ago

Here is the output of the Qualification Runner (re_input folder): https://github.com/Yuri05/Test20/releases/download/re_input/re_input.7z