Project export for Matlab reporting engine

[msevestre]

For each simulation, a structure will be exported to allow the reporting engine to run automatically

Individual simulation

Inputs

• Simulation-XML
• Calculated time profiles. If exported, reporting engine can use them instead of recalculating the model. Otherwise new simulation will be performed in Matlab
• Observed data in NONMEM format (spec. s. #402)

  Outputs (export of Matlab code for creating output figures and tables via reporting engine)

• Time profile plots (spec. s. #403) Reporting Engine currently only supports 1 time profile (and unlimited number of data sets) per plot
• PK-Analysis tables (spec s. #404) (should we export Matlab code for the calculation here or just export calculated values?)

Population simulation

Inputs

• Simulation-XML
• Population-CSV
• Calculated time profiles. If exported, reporting engine can use them instead of recalculating the model. Otherwise new simulation will be performed in Matlab
• Observed data in NONMEM format (spec. s. #402)

  Outputs (export of Matlab code for creating output figures and tables via reporting engine)

• Time profile plots (spec. s. #405) Reporting Engine currently only supports 1 time profile (and unlimited number of data sets) per plot
• Box-Whisker plots (spec. s. #406)
• Scatter plots (spec. s. #407)
• Range plots (spec. s. #408)

Individual simulations comparison

Inputs

Same as inputs for individual simulations, exported for all used simulations

Outputs

Same as individual time profiles

Population simulations comparison

Inputs

Same as inputs for population simulations, exported for all used simulations

Outputs

Same as population time profiles

[msevestre]

Specifications required /CC @KatrinCoboeken:

[KatrinCoboeken]

I'm not sure what was meant here . The only export that I'm missing for the reporting engine is an export for the sensitivity analysis. Ideal would be a table with all selected parameters, n steps and variance.

[msevestre]

Use case:

• Open PK-Sim Project
• For a given simulation (or a whole project) select "Export to MatlabXXX"

Expected Output:

• The action should create all required folder and files as well as matlab code required to start the reporting engine in Matlab without having to change anything. (e..g in Matlab you should only have to call the init Script and everything will work automatically)

Now we need to define

1. What needs to be exported (csv, xml, plots definition that will be created)
2. Expected folder structure
3. Matlab scripts that will do the actual work

[msevestre]

@KatrinCoboeken @Yuri05 Any news on that?

[msevestre]

@Yuri05 Inputs, Outputs Are those the expected subfolders? so if the simulation name is S1, should we S1/Inputs, S1/Outputs ?

[Yuri05]

I think it's not mandatory for Reporting Engine, but would make sense

[KatrinCoboeken]

For individual simulation the time profiles are not saved only for population simulations.

[KatrinCoboeken]

The Reporting engine is intended to generate a set of default plots for a set of Mean Model or Population simulations.
The main goal was not to reproduce a specific individualized plots.

[msevestre]

@KatrinCoboeken What do you mean by that? Export is only for population simulations?

[Yuri05]

obsolete