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Open-Systems-Pharmacology / QualificationRunner

Qualification runner in charge of managing a qualification workflow
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Imported observers not supported? #65

Closed PavelBal closed 4 years ago

PavelBal commented 4 years ago

I have created an observer and loaded it in PK-Sim. I then try to map the output of this observer to data in the qualification plan (let's say the observer is called Observer Plasma (Peripheral Venous Blood)):

                            {
                                "Project": "MyProject",
                                "Simulation": "mySim",
                                "Output": "Organism|PeripheralVenousBlood|Compoound|Observer Plasma (Peripheral Venous Blood)",
                                "ObservedData": "SomeDatta",
                                "Color": "#b2182b"
                            },

I get warnings:

warn: MyProject[0] 
      Could not find quantity with path 'mySim|Organism|PeripheralVenousBlood|Compoound|Observer Plasma (Peripheral Venous Blood)'.

Exporting the corresponding simulation to PKML and trying the access the observer from R works (I copy-pasted the path from the error message too make sure there is no typo).

msevestre commented 4 years ago

Observers are not supported in snapshot yet. Therefore they will not be in the project created from snapshot

msevestre commented 4 years ago

see https://github.com/Open-Systems-Pharmacology/PK-Sim/issues/1359

msevestre commented 4 years ago

This is indeed an issue :)

msevestre commented 4 years ago

FYI: I'll probably have a fix for this by Friday

Yuri05 commented 4 years ago

should be fixed with https://github.com/Open-Systems-Pharmacology/PK-Sim/issues/1359