Open-Systems-Pharmacology / QualificationRunner

Qualification runner in charge of managing a qualification workflow
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Simulation outputs not created even if --norun flag was not set #93

Closed Yuri05 closed 3 years ago

Yuri05 commented 3 years ago

@msevestre Something is wrong with the flag: when calling the QualiRunner from the Matlab reporting engine: simulation results (csv) are not exported. E.g. when called like below: QualificationRunner.exe -i C:\evaluation_plan.json -o C:\re_input -p C:\PK-Sim_10.0.230 xml and pkml are created, but not CSV with simulation results grafik

Compare to QualiRunner 9: grafik

msevestre commented 3 years ago

Weird..

msevestre commented 3 years ago

Just tried locally with the latest version

 QualificationRunner.exe -i "C:\projects\Qualification-DDI-CYP2C19\Qualification\Input\qualification_plan.json" -o "C:\test\norun" -p "C:\projects\PK-Sim\src\PKSim\bin\Debug\net472" -l "C:\projects\Qualification-DDI-CYP2C19\Qualification\log.txt" --logLevel Debug -f
info: OSPSuite[0]
      Starting qualification workflow
dbug: OSPSuite[0]
      Arguments:
Log file: C:\projects\Qualification-DDI-CYP2C19\Qualification\log.txt
      Log level: Debug
      Configuration file: C:\projects\Qualification-DDI-CYP2C19\Qualification\Input\qualification_plan.json
      Output folder: C:\test\norun
      Run Simulations: True

How does the output look like foe your? do you see the Run Simulations flag?

msevestre commented 3 years ago

e.g. Run Simulations: True or Run Simulations: False?

msevestre commented 3 years ago

as you can see, I have outputs image

msevestre commented 3 years ago

@Yuri05 Can't reproduce. Are you sure you are using the latest version :)

Yuri05 commented 3 years ago

I'm using QualiRunner 10.0.42 I don't see Run Simulations flag in the output

log-20210919.txt Input.zip QualiRunner_Output.zip

QualificationRunner -i C:\Temp\00\Evaluation\Input\evaluation_plan.json -o C:\Temp\00\re_input --logLevel Debug -p C:\PK-Sim_10.0.230 -f -l C:\Temp\00\log.txt
info: OSPSuite[0]
      Starting qualification workflow
dbug: OSPSuite[0]
      Arguments:
Log file: C:\Temp\00\log.txt
      Log level: Debug
      Configuration file: C:\Temp\00\Evaluation\Input\evaluation_plan.json
      Output folder: C:\Temp\00\re_input

dbug: OSPSuite[0]
      Copying static files
info: OSPSuite[0]
      Starting validation runs...
dbug: OSPSuite[0]
      Starting qualification run for project 'Alfentanil'
dbug: OSPSuite[0]
      Qualification configuration for project 'Alfentanil' exported to 'C:\Temp\00\re_input\temp\Alfentanil\config.json'
info: OSPSuite[0]
      Starting qualification runs...
dbug: OSPSuite[0]
      Starting qualification run for project 'Alfentanil'
dbug: OSPSuite[0]
      Qualification configuration for project 'Alfentanil' exported to 'C:\Temp\00\re_input\temp\Alfentanil\config.json'
info: OSPSuite[0]
      Qualification scenario finished in 02m:03s:297ms
info: OSPSuite[0]
      Qualification Workflow finished
msevestre commented 3 years ago

soemthing is wrong with this version. It is the old one

image (still shows the RUN falg as opposed to NO RUN(

msevestre commented 3 years ago

yep image

Version 43 has the norun flag. (false by default)