Knowledge network node labels are presented based on compile order (e.g. the first equivalent BEL term wins). This is inconvenient for users as entities may show up using identifiers (e.g. EGID:207 versus the more recognizable HGNC:AKT1).
OpenBEL namespaces can be ordered based on view preference so that node labels convert to use symbols and names before resorting to ids (e.g. if there is no equivalent from id to name). Based on information from @ncatlett the following preferences can be taken:
Biological Process
GOBP
MESHPP
Chemical
CHEBI
SCHEM
Complex
GOCC
SCOMP
Disease
DO
MESHD
SDIS
Gene and Gene Product
HGNC
MGI
RGD
SP
EGID
AFFY
Location
GOCC
MESHCS
Other
SFAM
OpenBEL would currently be able to support namespace view preference based on supported domains Gene and Gene Products, Biological Process, and Chemical. Some work is required to update expected domain BiologicalProcess to Biological Process (e.g. with a space like the namespace belns contain).
Knowledge network node labels are presented based on compile order (e.g. the first equivalent BEL term wins). This is inconvenient for users as entities may show up using identifiers (e.g.
EGID:207versus the more recognizableHGNC:AKT1).OpenBEL namespaces can be ordered based on view preference so that node labels convert to use symbols and names before resorting to ids (e.g. if there is no equivalent from id to name). Based on information from @ncatlett the following preferences can be taken:
OpenBEL would currently be able to support namespace view preference based on supported domains Gene and Gene Products, Biological Process, and Chemical. Some work is required to update expected domain BiologicalProcess to Biological Process (e.g. with a space like the namespace belns contain).