OpenBEL bel.rb issues - Githubissues

OpenBEL / bel.rb

Process BEL (Biological Expression Language) with ruby.

Apache License 2.0

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issues

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Error bel2rdf

#130 berenicew opened 7 years ago
1
Remove ragel parsers in bel.rb in favor of bel_parser library.

#129 abargnesi opened 8 years ago
0
How is lib/bel/script.rb generated?

#128 nbargnesi opened 8 years ago
1
Unable to use jgf translator

#127 nbargnesi opened 8 years ago
3
Out of memory when translating BEL Script to Turtle using JRuby.

#126 abargnesi closed 8 years ago
0
Fixes #123

#125 sanea closed 8 years ago
1
Fixes #123

#124 sanea closed 8 years ago
2
Null pointer exception

#123 juliakozlovsky closed 8 years ago
6
Integrate improved parser (bel_parser) into bel.rb.

#122 abargnesi opened 8 years ago
0
BEL Nanopub model

#121 abargnesi closed 8 years ago
0
Make RDF annotation and namespace properties explicit and lower cost

#120 abargnesi closed 8 years ago
0
Issue92

#119 rumilbaybikov closed 8 years ago
0
Issue92: map annotation/namespace definitions from external yml file

#118 rumilbaybikov closed 8 years ago
5
XBEL translator does not respect streaming option.

#117 abargnesi closed 8 years ago
0
0.7.0

#116 abargnesi closed 8 years ago
0
Replace uri with prefixes for turtle format

#115 rumilbaybikov closed 8 years ago
6
Incorrect statement group serialization when citation id is blank

#114 abargnesi closed 8 years ago
0
BEL RDF schema

#113 neoflex opened 8 years ago
2
phosphorylation in rdf conversion

#112 decarlin opened 8 years ago
0
Serialization of BEL Script / XBEL can produce incorrect annotation and namespaces references

#111 abargnesi closed 8 years ago
0
Improve quoting API, reliability, and testing.

#110 abargnesi closed 8 years ago
2
Conversion of nested statements

#109 mhsano opened 8 years ago
0
RDF representation for literary identifiers

#108 abargnesi opened 8 years ago
1
Update quoting.rb

#107 0sc closed 8 years ago
0
RDF Conversion for BEL Script Internal Annotations

#106 juliakozlovsky opened 8 years ago
2
Separate random sampling from random data in BEL generator

#105 abargnesi closed 8 years ago
0
Quoting BEL parameter values should be idempotent

#104 abargnesi closed 8 years ago
1
Consolidate bel subcommands into one

#103 abargnesi opened 8 years ago
0
Integrate BEL generator and provide subcommand

#102 abargnesi closed 8 years ago
1
Single implementation for annotations and namespaces

#101 abargnesi opened 8 years ago
0
Access BEL annotation resource values

#100 abargnesi closed 8 years ago
0
Fix missing namespace prefixes that occur when parsing IO in chunks

#99 abargnesi closed 8 years ago
5
Support serialization strategies for BEL Script translator

#98 abargnesi closed 8 years ago
1
Warn when BEL namespace file (i.e. .belns) could not be retrieved

#97 abargnesi closed 8 years ago
0
RDF conversion of Parameter does not include encoding type statement

#96 abargnesi closed 8 years ago
0
Split RDF translator into multiple translators by file format

#95 abargnesi closed 8 years ago
2
Consistent representation of Annotation and Namespace references between core Translator plugins

#94 abargnesi closed 8 years ago
0
Error translating to JSON Evidence format using Oj adapter

#93 abargnesi closed 8 years ago
0
Configure annotation/namespace definitions

#92 abargnesi closed 8 years ago
3
Incorrect namespace concept URI when converting Term to RDF

#91 abargnesi closed 8 years ago
0
Failure to run BEL upgrade command; yields name error

#90 abargnesi closed 8 years ago
0
Move rdf functionality into separate gem

#89 abargnesi opened 8 years ago
4
Command to list available plugins (bel list-plugins?)

#88 abargnesi closed 8 years ago
0
Travis build failures on JRuby due to gems with C extensions

#87 abargnesi closed 8 years ago
1
Migrate format extensions to translator plugins

#86 abargnesi closed 8 years ago
4
Add test script to gosh scripts

#85 abargnesi closed 8 years ago
0
Development of bel.rb on Windows

#84 abargnesi opened 9 years ago
1
remove bundler

#83 nbargnesi closed 9 years ago
2
Remove bundler

#82 nbargnesi closed 8 years ago
1
add GEM_BUILD_OPTS and GEM_INSTALL_OPTS

#81 nbargnesi closed 9 years ago
2