Open abargnesi opened 8 years ago
I think you are missing part of the examples in the description. The examples are intended to be comprehensive:
p(HGNC:YFG, frag(5_20))
p(HGNC:YFG, frag(1_?))
p(HGNC:YFG, frag(?_*))
p(HGNC:YFG, frag(?))
The lower bound should be the start codon (position 1), and the upper bound is the length of the referenced protein (stop codon is represented as *
)Could we also have:
p(HGNC:YFG, frag(5_*))
(start code at position 5; unknown stop codon)
and
p(HGNC:YFG, frag(?_20))
(unknown start codon; stop codon at position 20)
yes -
p(HGNC:YFG,frag(5_*))
p(HGNC:YFG, frag(?_20))
in general:
The fragment range description specifies the following formats:
5_20
1_?
?_*
?
fragment with unknown start/stop and a descriptorAre these examples comprehensive? Is there an lower and upper bound when you know the start/stop positions?
/cc @ncatlett