Expression orthology - Githubissues

OpenBEL / openbel-api

RESTful web API for OpenBEL Platform

Apache License 2.0

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Expression orthology #63

Open abargnesi opened 9 years ago

abargnesi commented 9 years ago

Path:

/api/expressions/{bel}/orthologs

{bel} term example:

p(HGNC:AKT1)

{bel} statement example:

p(HGNC:AKT1) => bp(GOBP:"apoptotic process")

extra parameters

{namespace_preference} - namespaces that map as in /api/namespaces/{namespace}

ncatlett commented 9 years ago

Ideally, only namespace values associated with a species will be orthologized. For example: GOBP, GOCC, CHEBI, and SFAM values are not species specific and do not need to be orthology transformed. EGID, HGNC, MGI, RGD terms are associated with a species and may have orthologs.