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OpenBEL / resource-generator

Python modules to generate BEL resource documents.
Apache License 2.0
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Error building equivalence files (related to ChEBI dataset) #70

Closed abargnesi closed 8 years ago

abargnesi commented 8 years ago

The following error was received in phase V:

19-Apr-2016 14:24:53    Traceback (most recent call last):
19-Apr-2016 14:24:53      File "./gp_baseline.py", line 335, in <module>
19-Apr-2016 14:24:53        equiv.equiv(data, verbose)
19-Apr-2016 14:24:53      File "/opt/data/bamboo/home/build-dir/131073/OR-BR-JOB1/equiv.py", line 181, in equiv
19-Apr-2016 14:24:53        id_temp_dict, name_temp_dict = write_root_beleq(d, verbose)
19-Apr-2016 14:24:53      File "/opt/data/bamboo/home/build-dir/131073/OR-BR-JOB1/equiv.py", line 409, in write_root_beleq
19-Apr-2016 14:24:53        write_beleq(eq_id_dict, d._name + '-ids', d.source_file)
19-Apr-2016 14:24:53      File "/opt/data/bamboo/home/build-dir/131073/OR-BR-JOB1/equiv.py", line 341, in write_beleq
19-Apr-2016 14:24:53        header = get_citation_info(fullname, header, source_file)
19-Apr-2016 14:24:53      File "/opt/data/bamboo/home/build-dir/131073/OR-BR-JOB1/common.py", line 221, in get_citation_info
19-Apr-2016 14:24:53        pubver = p_chebi_1.search(line).group(1)
19-Apr-2016 14:24:53    AttributeError: 'NoneType' object has no attribute 'group'

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