Backport fixes from #295, #298, and #300

OpenBioSim / biosimspace

An interoperable Python framework for biomolecular simulation.

https://biosimspace.openbiosim.org

GNU General Public License v3.0

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Closed lohedges closed 4 months ago

lohedges commented 4 months ago

This PR backports the fix from PR #295, #298, and #300 into main.

I confirm that I have merged the latest version of main into this branch before issuing this pull request (e.g. by running git pull origin main): [y]
I confirm that I have permission to release this code under the GPL3 license: [y]