issues
search
OpenBioSim
/
biosimspace_tutorials
A tutorials suite for BioSimSpace.
GNU General Public License v3.0
14
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add protein FEP tutorial
#27
akalpokas
closed
6 days ago
2
Parametrizing Protein with TPO Residue
#26
amarye
opened
2 weeks ago
5
Fix typos in ABFE setup tutorial
#25
fjclark
closed
1 month ago
1
Not picking gpu
#24
mayank-kohli
closed
1 week ago
9
[BUG] [ABFE] ignore_warning=True NOT WORK for lam_vals
#23
ErikZhang-9762
closed
7 months ago
1
Funnel metadynamics error
#22
amarye
closed
7 months ago
3
Tutorial 04 - Add support for SOMD2 as a FEP engine
#21
akalpokas
closed
7 months ago
1
Error in protein parameterization
#20
mayank-kohli
closed
8 months ago
5
ABFE using openmm
#19
mayank-kohli
closed
8 months ago
1
Tutorial 1: 01_introduction/05_running_nodes.ipynb runtime error
#18
jmichel80
closed
8 months ago
2
Tutorial 1: 01_introduction/03_molecular_dynamics.ipynb broken with 2023.4
#17
jmichel80
closed
9 months ago
7
updates to steered MD notebooks
#16
jmichel80
closed
9 months ago
0
Type Error
#15
mayank-kohli
closed
9 months ago
2
Update ABFE setup notebook to include multiple distance restraints
#14
fjclark
closed
9 months ago
0
Tutorial 04: 02_RBFE
#13
mayank-kohli
closed
9 months ago
2
Reduce Memory Usage of ABFE Setup Notebook
#12
fjclark
closed
11 months ago
4
01_setup_abfe notebook crashes on try.openbiosim.org
#11
akalpokas
closed
8 months ago
8
Minor fix for RBFE/02_analysis_rbfe notebook
#10
akalpokas
closed
11 months ago
0
Added missing help(process) cell in tutorial
#9
akalpokas
closed
11 months ago
0
alchemical_introduction tutorial is broken on try.openbiosim.org
#5
jmichel80
closed
9 months ago
44
typo suggestions
#4
ppxasjsm
closed
1 year ago
1
pdb4amber link in notebook 02 of the introduction is not working
#6
ppxasjsm
closed
9 months ago
3
Fail when running mamba install instructions
#7
ppxasjsm
closed
9 months ago
2
updated sMD tutorial to work with downloaded trajectory
#3
jmichel80
closed
1 year ago
0
update analysis notebook to match trimmed down example sMD trajectory
#2
AdeleHardie
closed
1 year ago
0
Broken links in TOCs of the notebooks
#1
jmichel80
closed
1 year ago
2
Tutorial 4: 01_setup_rbfe - update required for amber support
#8
jmichel80
opened
1 year ago
5