Reaction diffusion and BDF solver fixes - Githubissues

OpenCMISS / iron

Source code repository for OpenCMISS-Iron

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Reaction diffusion and BDF solver fixes #131

Closed dladd closed 6 years ago

dladd commented 6 years ago

Reaction diffusion

bugfix for missing variable declaration
only output exelem files for first timestep and species (big IO / disk space saver since we don't currently have problems that require time-dependent exelem files. This is set with a flag so it can be easily changed if we have future equations sets or problem setups that require this)

BDF solver

Check whether array has already been allocated in PETSc context set
In RHS evaluate use known stateData for contiguous state data (the temporary states used in the non-contiguous case is intended for use with a non-contiguous offset)
Test now passing: Python_Bindings_CellMLModelIntegration_n98_BDF

abi-git-user commented 6 years ago

Can one of the admins verify this patch?