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OpenCOMPES / sed

Single Event Data Frame Processor: Backend to handle photoelectron resolved datastreams
https://opencompes.github.io/sed/
MIT License
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Example for FLASH nexus conversion/metadata collection #420

Open rettigl opened 3 months ago

rettigl commented 3 months ago

This PR is intended for discussing necessary/missing changes to the FLASH metadata structure for conversion to nexus.

coveralls commented 3 months ago

Pull Request Test Coverage Report for Build 9811460900

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Totals Coverage Status
Change from base Build 9811469473: 0.0%
Covered Lines: 6457
Relevant Lines: 7027
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coveralls commented 2 months ago

Pull Request Test Coverage Report for Build 11150717298

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Files with Coverage Reduction New Missed Lines %
sed/binning/numba_bin.py 3 87.74%
<!-- Total: 3 -->
Totals Coverage Status
Change from base Build 11102417260: -0.04%
Covered Lines: 6483
Relevant Lines: 7054
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rettigl commented 1 day ago

@kutnyakhov @zain-sohail Running the current state (rebased to master) outside maxwell results in the following warnings during saving:

Using mpes reader to convert the given files:  
• ../sed/config/NXmpes_config-HEXTOF.json
Could not find value for key /ENTRY[entry]/entry_identifier with value @attrs:metadata/_id.
Tried prefixes: [('@attrs', 'metadata/_id')].
Could not find value for key /ENTRY[entry]/USER[user0]/name with value @attrs:metadata/pi/last_name.
Tried prefixes: [('@attrs', 'metadata/pi/last_name')].
Could not find value for key /ENTRY[entry]/USER[user0]/affiliation with value @attrs:metadata/pi/institute.
Tried prefixes: [('@attrs', 'metadata/pi/institute')].
Could not find value for key /ENTRY[entry]/USER[user0]/email with value @attrs:metadata/pi/email.
Tried prefixes: [('@attrs', 'metadata/pi/email')].
Could not find value for key /ENTRY[entry]/USER[user1]/name with value @attrs:metadata/leader/last_name.
Tried prefixes: [('@attrs', 'metadata/leader/last_name')].
Could not find value for key /ENTRY[entry]/USER[user1]/affiliation with value @attrs:metadata/leader/institute.
Tried prefixes: [('@attrs', 'metadata/leader/institute')].
Could not find value for key /ENTRY[entry]/USER[user1]/email with value @attrs:metadata/leader/email.
Tried prefixes: [('@attrs', 'metadata/leader/email')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/projection with value @attrs:metadata/scientificMetadata/collectioncolumn/projection.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/projection')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/lens_mode with value @attrs:metadata/scientificMetadata/collectioncolumn/lens_mode.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/lens_mode')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/extractor_voltage with value @attrs:metadata/scientificMetadata/collectioncolumn/extractor_voltage/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/extractor_voltage/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/extractor_voltage/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/extractor_voltage/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/extractor_voltage/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/extractor_current with value @attrs:metadata/scientificMetadata/collectioncolumn/extractor_current/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/extractor_current/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/extractor_current/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/extractor_current/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/extractor_current/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/shape with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_shape.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_shape')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/size with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_size/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_size/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/size/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_size/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_size/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/POSITIONER[fa_m1]/value with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_x/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_x/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/POSITIONER[fa_m1]/value/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_x/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_x/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/POSITIONER[fa_m2]/value with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_y/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_y/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/field_aperture/POSITIONER[fa_m2]/value/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/field_aperture_y/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/field_aperture_y/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/contrast_aperture/size with value @attrs:metadata/scientificMetadata/collectioncolumn/contrast_aperture_size/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/contrast_aperture_size/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/COLLECTIONCOLUMN[collectioncolumn]/contrast_aperture/size/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/contrast_aperture_size/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/contrast_aperture_size/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/ENERGYDISPERSION[energydispersion]/pass_energy with value @attrs:metadata/scientificMetadata/collectioncolumn/tof_voltage/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/tof_voltage/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/ENERGYDISPERSION[energydispersion]/pass_energy/@units with value @attrs:metadata/scientificMetadata/collectioncolumn/tof_voltage/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/collectioncolumn/tof_voltage/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/amplifier_type with value @attrs:metadata/scientificMetadata/detector/amplifier_type.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/amplifier_type')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/detector_type with value @attrs:metadata/scientificMetadata/detector/detector_type.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/detector_type')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/sensor_pixels with value @attrs:metadata/scientificMetadata/detector/sensor_pixels.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/sensor_pixels')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/amplifier_bias with value @attrs:metadata/scientificMetadata/detector/amplifier_bias/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/amplifier_bias/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/amplifier_bias/@units with value @attrs:metadata/scientificMetadata/detector/amplifier_bias/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/amplifier_bias/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/amplifier_voltage with value @attrs:metadata/scientificMetadata/detector/amplifier_voltage/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/amplifier_voltage/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/amplifier_voltage/@units with value @attrs:metadata/scientificMetadata/detector/amplifier_voltage/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/amplifier_voltage/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/detector_voltage with value @attrs:metadata/scientificMetadata/detector/detector_voltage/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/detector_voltage/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR[detector]/detector_voltage/@units with value @attrs:metadata/scientificMetadata/detector/detector_voltage/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/detector/detector_voltage/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/name with value @attrs:metadata/scientificMetadata/source/name.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/name')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/probe with value @attrs:metadata/scientificMetadata/source/probe.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/probe')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/type with value @attrs:metadata/scientificMetadata/source/type.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/type')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/frequency with value @attrs:metadata/scientificMetadata/source/repetition_rate/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/repetition_rate/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/frequency/@units with value @attrs:metadata/scientificMetadata/source/repetition_rate/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/repetition_rate/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_probe]/incident_energy with value @attrs:metadata/scientificMetadata/source/photon_energy/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/photon_energy/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_probe]/incident_energy/@units with value @attrs:metadata/scientificMetadata/source/dispersion/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/dispersion/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_probe]/incident_energy_dispersion with value @attrs:metadata/scientificMetadata/source/dispersion/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/dispersion/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_probe]/incident_energy_dispersion/@units with value @attrs:metadata/scientificMetadata/source/dispersion/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/source/dispersion/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_wavelength with value @attrs:metadata/scientificMetadata/laser/wavelength/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/wavelength/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_wavelength/@units with value @attrs:metadata/scientificMetadata/laser/wavelength/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/wavelength/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_energy with value @attrs:metadata/scientificMetadata/laser/incident_energy/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/incident_energy/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_energy/@units with value @attrs:metadata/scientificMetadata/laser/incident_energy/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/incident_energy/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/pulse_duration with value @attrs:metadata/scientificMetadata/laser/pulse_duration/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/pulse_duration/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/pulse_duration/@units with value @attrs:metadata/scientificMetadata/laser/pulse_duration/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/pulse_duration/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_polarization with value @attrs:metadata/scientificMetadata/laser/incident_polarization/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/incident_polarization/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_polarization/@units with value @attrs:metadata/scientificMetadata/laser/incident_polarization/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/incident_polarization/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/pulse_energy with value @attrs:metadata/scientificMetadata/laser/pulse_energy/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/pulse_energy/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/pulse_energy/@units with value @attrs:metadata/scientificMetadata/laser/pulse_energy/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/laser/pulse_energy/unit')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/MANIPULATOR[manipulator]/type with value @attrs:metadata/scientificMetadata/manipulator/type.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/manipulator/type')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/MANIPULATOR[manipulator]/sample_bias_voltmeter/value with value @attrs:metadata/scientificMetadata/manipulator/sample_bias/value.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/manipulator/sample_bias/value')].
Could not find value for key /ENTRY[entry]/INSTRUMENT[instrument]/MANIPULATOR[manipulator]/sample_bias_voltmeter/value/@units with value @attrs:metadata/scientificMetadata/manipulator/sample_bias/unit.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/manipulator/sample_bias/unit')].
Could not find value for key /ENTRY[entry]/SAMPLE[sample]/name with value @attrs:metadata/scientificMetadata/sample/sample_name.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/sample/sample_name')].
Could not find value for key /ENTRY[entry]/SAMPLE[sample]/preparation_description with value @attrs:metadata/scientificMetadata/sample/preparation_description.
Tried prefixes: [('@attrs', 'metadata/scientificMetadata/sample/preparation_description')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/DISTORTION[distortion]/symmetry with value @attrs:metadata/momentum_correction/correction/rotsym.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/correction/rotsym')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/DISTORTION[distortion]/original_centre with value @attrs:metadata/momentum_correction/correction/pcent.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/correction/pcent')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/DISTORTION[distortion]/original_points with value @attrs:metadata/momentum_correction/correction/pouter.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/correction/pouter')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/DISTORTION[distortion]/cdeform_field with value @attrs:metadata/momentum_correction/correction/cdeform_field.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/correction/cdeform_field')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/DISTORTION[distortion]/rdeform_field with value @attrs:metadata/momentum_correction/correction/rdeform_field.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/correction/rdeform_field')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/depends_on with value @attrs:metadata/momentum_correction/registration/depends_on.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/depends_on')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_x] with value @attrs:metadata/momentum_correction/registration/trans_x/value.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_x/value')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_x]/@transformation_type with value @attrs:metadata/momentum_correction/registration/trans_x/type.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_x/type')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_x]/@units with value @attrs:metadata/momentum_correction/registration/trans_x/units.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_x/units')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_x]/@vector with value @attrs:metadata/momentum_correction/registration/trans_x/vector.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_x/vector')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_x]/@depends_on with value @attrs:metadata/momentum_correction/registration/trans_x/depends_on.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_x/depends_on')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_y] with value @attrs:metadata/momentum_correction/registration/trans_y/value.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_y/value')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_y]/@units with value @attrs:metadata/momentum_correction/registration/trans_y/units.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_y/units')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_y]/@transformation_type with value @attrs:metadata/momentum_correction/registration/trans_y/type.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_y/type')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_y]/@vector with value @attrs:metadata/momentum_correction/registration/trans_y/vector.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_y/vector')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[trans_y]/@depends_on with value @attrs:metadata/momentum_correction/registration/trans_y/depends_on.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/trans_y/depends_on')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z] with value @attrs:metadata/momentum_correction/registration/rot_z/value.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/value')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z]/@units with value @attrs:metadata/momentum_correction/registration/rot_z/units.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/units')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z]/@transformation_type with value @attrs:metadata/momentum_correction/registration/rot_z/type.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/type')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z]/@offset with value @attrs:metadata/momentum_correction/registration/rot_z/offset.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/offset')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z]/@vector with value @attrs:metadata/momentum_correction/registration/rot_z/vector.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/vector')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/REGISTRATION[registration]/TRANSFORMATIONS[transformations]/AXISNAME[rot_z]/@depends_on with value @attrs:metadata/momentum_correction/registration/rot_z/depends_on.
Tried prefixes: [('@attrs', 'metadata/momentum_correction/registration/rot_z/depends_on')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[kx_calibration]/scaling with value @attrs:metadata/momentum_calibration/calibration/kx_scale.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/kx_scale')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[kx_calibration]/offset with value @attrs:metadata/momentum_calibration/calibration/x_center.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/x_center')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[kx_calibration]/calibrated_axis with value @attrs:metadata/momentum_calibration/calibration/kx_axis.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/kx_axis')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[ky_calibration]/scaling with value @attrs:metadata/momentum_calibration/calibration/ky_scale.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/ky_scale')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[ky_calibration]/offset with value @attrs:metadata/momentum_calibration/calibration/y_center.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/y_center')].
Could not find value for key /ENTRY[entry]/PROCESS[process]/CALIBRATION[ky_calibration]/calibrated_axis with value @attrs:metadata/momentum_calibration/calibration/ky_axis.
Tried prefixes: [('@attrs', 'metadata/momentum_calibration/calibration/ky_axis')].
The entry '/ENTRY[entry]/definition/@version' (value: v2022.07.post1.dev1490+gd3c5237d) should not be changed by the reader. The provided version 'None' is kept. We assume you know what you are doing.
WARNING: The data entry corresponding to /ENTRY[entry]/USER[user0]/name is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/USER[user0]/affiliation is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/USER[user1]/name is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/USER[user1]/affiliation is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/INSTRUMENT[instrument]/sourceTYPE[source_probe]/type is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_probe]/incident_energy is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/INSTRUMENT[instrument]/beamTYPE[beam_pump]/incident_energy is required and hasn't been supplied by the reader.
WARNING: The required group, /ENTRY[entry]/INSTRUMENT[instrument]/ELECTRONANALYSER[electronanalyser]/DETECTOR, hasn't been supplied.
WARNING: The data entry corresponding to /ENTRY[entry]/INSTRUMENT[instrument]/MANIPULATOR[manipulator]/sample_bias_voltmeter/value is required and hasn't been supplied by the reader.
WARNING: The data entry corresponding to /ENTRY[entry]/SAMPLE[sample]/name is required and hasn't been supplied by the reader.
WARNING: Field /ENTRY[entry]/SAMPLE[sample]/temperature/temperature_sensor written without documentation.
WARNING: Field /ENTRY[entry]/SAMPLE[sample]/gas_pressure/pressure_gauge written without documentation.
WARNING: Field /ENTRY[entry]/PROCESS[process]/energy_calibration/coefficients written without documentation.
WARNING: Field /ENTRY[entry]/PROCESS[process]/energy_calibration/fit_function written without documentation.
WARNING: Field /ENTRY[entry]/PROCESS[process]/energy_calibration/original_axis written without documentation.
WARNING: Field /ENTRY[entry]/PROCESS[process]/energy_calibration/calibrated_axis written without documentation.
The output file generated: runs44824-27.nxs.

I.e. a huge number of metadata is not being found.

Running the same on Maxwell results in an error when trying to load the metadata file:

---------------------------------------------------------------------------
FileNotFoundError                         Traceback (most recent call last)
Cell In[46], line 3
      1 from sed.core.config import load_config
      2 import numpy as np
----> 3 metadata = load_config(path + "/44824_20230324T060430.json")
      5 # Fix metadata
      6 metadata["scientificMetadata"]["Laser"]["wavelength"]["value"] = float(metadata["scientificMetadata"]["Laser"]["wavelength"]["value"][:-2])

File ~/sed/sed/core/config.py:159, in load_config(config_path)
    157 config_file = Path(config_path)
    158 if not config_file.is_file():
--> 159     raise FileNotFoundError(
    160         f"could not find the configuration file: {config_file}",
    161     )
    163 if config_file.suffix == ".json":
    164     with open(config_file, encoding="utf-8") as stream:

FileNotFoundError: could not find the configuration file: /asap3/flash/gpfs/pg2/2023/data/11019101/raw/hdf/offline/fl1user3/44824_20230324T060430.json