OpenChemistry / avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
https://two.avogadro.cc/
BSD 3-Clause "New" or "Revised" License
452 stars 173 forks source link

Unable to retrieve program name for "/usr/lib64/avogadro2/scripts/charges/antechamber.py" #1323

Closed sagitter closed 1 year ago

sagitter commented 1 year ago

Hi all

Avogadro version:

Desktop version:

Describe the bug This error comes out when i execute avogadro2:

ScriptLoader::queryProgramName: Unable to retrieve program name for "/usr/lib64/avogadro2/scripts/charges/antechamber.py" ; "Error running script '/usr/bin/python3 /usr/lib64/avogadro2/scripts/charges/antechamber.py --display-name --lang en_US': Abnormal exit status 1 (Errore sconosciuto.: Unknown error)\n\nOutput:\nTraceback (most recent call last):\n  File \"/usr/lib64/avogadro2/scripts/charges/antechamber.py\", line 151, in <module>\n    raise RuntimeError(\"antechamber is unavailable\")\nRuntimeError: antechamber is unavailable\n"

To Reproduce Steps to reproduce the behavior:

  1. Install Avogadro2 in Fedora
  2. By command line:

$ export QT_QPA_PLATFORM=wayland or $ export QT_QPA_PLATFORM=xcb

then

$ export LD_LIBRARY_PATH=/usr/lib64/avogadro2
$ avogadro2

Expected behavior

No error

Additional context

This issue is reported by a Fedora user: https://bugzilla.redhat.com/show_bug.cgi?id=2228144

Directories/files's tree of avogadro2-libs in Fedora 38:

[sagitter@localhost avogadro2]$ rpm -q --list avogadro2-libs
/usr/lib64/avogadro2
/usr/lib64/avogadro2/libgwavi.a
/usr/lib64/avogadro2/scripts
/usr/lib64/avogadro2/scripts/charges
/usr/lib64/avogadro2/scripts/charges/antechamber.py
/usr/lib64/avogadro2/scripts/charges/xtb.py
/usr/lib64/avogadro2/scripts/scripts
/usr/lib64/avogadro2/staticplugins
/usr/lib64/avogadro2/staticplugins/ApplyColors.a
/usr/lib64/avogadro2/staticplugins/BallStick.a
/usr/lib64/avogadro2/staticplugins/BondCentric.a
/usr/lib64/avogadro2/staticplugins/Bonding.a
/usr/lib64/avogadro2/staticplugins/Cartoons.a
/usr/lib64/avogadro2/staticplugins/CloseContacts.a
/usr/lib64/avogadro2/staticplugins/CoordinateEditor.a
/usr/lib64/avogadro2/staticplugins/CopyPaste.a
/usr/lib64/avogadro2/staticplugins/Cp2kInput.a
/usr/lib64/avogadro2/staticplugins/Crystal.a
/usr/lib64/avogadro2/staticplugins/CrystalScene.a
/usr/lib64/avogadro2/staticplugins/CustomElements.a
/usr/lib64/avogadro2/staticplugins/Editor.a
/usr/lib64/avogadro2/staticplugins/FetchPDB.a
/usr/lib64/avogadro2/staticplugins/Focus.a
/usr/lib64/avogadro2/staticplugins/Force.a
/usr/lib64/avogadro2/staticplugins/GamessInput.a
/usr/lib64/avogadro2/staticplugins/Hydrogens.a
/usr/lib64/avogadro2/staticplugins/ImportPQR.a
/usr/lib64/avogadro2/staticplugins/InsertFragment.a
/usr/lib64/avogadro2/staticplugins/Label.a
/usr/lib64/avogadro2/staticplugins/LabelEditor.a
/usr/lib64/avogadro2/staticplugins/LammpsInput.a
/usr/lib64/avogadro2/staticplugins/Licorice.a
/usr/lib64/avogadro2/staticplugins/LineFormatInput.a
/usr/lib64/avogadro2/staticplugins/Manipulator.a
/usr/lib64/avogadro2/staticplugins/MeasureTool.a
/usr/lib64/avogadro2/staticplugins/Meshes.a
/usr/lib64/avogadro2/staticplugins/MolecularProperties.a
/usr/lib64/avogadro2/staticplugins/MongoChem.a
/usr/lib64/avogadro2/staticplugins/Navigator.a
/usr/lib64/avogadro2/staticplugins/NetworkDatabases.a
/usr/lib64/avogadro2/staticplugins/NonCovalent.a
/usr/lib64/avogadro2/staticplugins/NucleicInput.a
/usr/lib64/avogadro2/staticplugins/OpenBabel.a
/usr/lib64/avogadro2/staticplugins/OpenMMInput.a
/usr/lib64/avogadro2/staticplugins/OverlayAxes.a
/usr/lib64/avogadro2/staticplugins/POVRay.a
/usr/lib64/avogadro2/staticplugins/PlayerTool.a
/usr/lib64/avogadro2/staticplugins/PluginDownloader.a
/usr/lib64/avogadro2/staticplugins/PropertyTables.a
/usr/lib64/avogadro2/staticplugins/QTAIMExtension.a
/usr/lib64/avogadro2/staticplugins/QTAIMScenePlugin.a
/usr/lib64/avogadro2/staticplugins/QuantumInput.a
/usr/lib64/avogadro2/staticplugins/ResetView.a
/usr/lib64/avogadro2/staticplugins/SVG.a
/usr/lib64/avogadro2/staticplugins/ScriptCharges.a
/usr/lib64/avogadro2/staticplugins/ScriptFileFormats.a
/usr/lib64/avogadro2/staticplugins/Select.a
/usr/lib64/avogadro2/staticplugins/Selection.a
/usr/lib64/avogadro2/staticplugins/SpaceGroup.a
/usr/lib64/avogadro2/staticplugins/Spectra.a
/usr/lib64/avogadro2/staticplugins/Surfaces.a
/usr/lib64/avogadro2/staticplugins/ThreeDMol.a
/usr/lib64/avogadro2/staticplugins/VRML.a
/usr/lib64/avogadro2/staticplugins/VanDerWaals.a
/usr/lib64/avogadro2/staticplugins/VanDerWaalsAO.a
/usr/lib64/avogadro2/staticplugins/Wireframe.a
/usr/lib64/avogadro2/staticplugins/apbs.a
/usr/lib64/avogadro2/staticplugins/commands.a
/usr/lib64/libAvogadroCalc.so.1
/usr/lib64/libAvogadroCalc.so.1.97.0
/usr/lib64/libAvogadroCore.so.1
/usr/lib64/libAvogadroCore.so.1.97.0
/usr/lib64/libAvogadroIO.so.1
/usr/lib64/libAvogadroIO.so.1.97.0
/usr/lib64/libAvogadroMoleQueue.so.1
/usr/lib64/libAvogadroMoleQueue.so.1.97.0
/usr/lib64/libAvogadroQtGui.so.1
/usr/lib64/libAvogadroQtGui.so.1.97.0
/usr/lib64/libAvogadroQtOpenGL.so.1
/usr/lib64/libAvogadroQtOpenGL.so.1.97.0
/usr/lib64/libAvogadroQtPlugins.so.1
/usr/lib64/libAvogadroQtPlugins.so.1.97.0
/usr/lib64/libAvogadroQuantumIO.so.1
/usr/lib64/libAvogadroQuantumIO.so.1.97.0
/usr/lib64/libAvogadroRendering.so.1
/usr/lib64/libAvogadroRendering.so.1.97.0
/usr/lib64/python3.11/site-packages/avogadro2
/usr/lib64/python3.11/site-packages/avogadro2/scripts
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/__pycache__
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/__pycache__/antechamber.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/__pycache__/antechamber.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/__pycache__/xtb.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/__pycache__/xtb.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/antechamber.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/charges/xtb.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts
/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/__pycache__
/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/__pycache__/zyx.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/__pycache__/zyx.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/formatScripts/zyx.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/dalton.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/dalton.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gamessuk.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gamessuk.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gaussian.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/gaussian.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/molpro.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/molpro.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/mopac.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/mopac.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/nwchem.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/nwchem.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/orca.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/orca.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/psi4.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/psi4.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/pyscf.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/pyscf.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/qchem.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/qchem.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/terachem.cpython-311.opt-1.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/__pycache__/terachem.cpython-311.pyc
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/dalton.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/gaussian.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/molpro.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/mopac.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/nwchem.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/orca.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/psi4.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/pyscf.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/qchem.py
/usr/lib64/python3.11/site-packages/avogadro2/scripts/inputGenerators/terachem.py
/usr/share/avogadro2
/usr/share/avogadro2/crystals
/usr/share/avogadro2/crystals/README.md
/usr/share/avogadro2/crystals/antimonides
/usr/share/avogadro2/crystals/antimonides/AlSb.cif
/usr/share/avogadro2/crystals/antimonides/GaSb.cif
/usr/share/avogadro2/crystals/antimonides/InSb.cif
/usr/share/avogadro2/crystals/arsenides
/usr/share/avogadro2/crystals/arsenides/AlAs.cif
/usr/share/avogadro2/crystals/arsenides/BAs.cif
/usr/share/avogadro2/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif
/usr/share/avogadro2/crystals/arsenides/CoAs3-Skutterudite.cif
/usr/share/avogadro2/crystals/arsenides/GaAs.cif
/usr/share/avogadro2/crystals/arsenides/InAs.cif
/usr/share/avogadro2/crystals/arsenides/NiAs-Nickeline.cif
/usr/share/avogadro2/crystals/carbides
/usr/share/avogadro2/crystals/carbides/SiC-2H-Moissanite.cif
/usr/share/avogadro2/crystals/carbides/SiC-3C-beta.cif
/usr/share/avogadro2/crystals/carbides/SiC-6H-alpha.cif
/usr/share/avogadro2/crystals/carbides/SiC-Moissanite.cif
/usr/share/avogadro2/crystals/carbides/SiC.cif
/usr/share/avogadro2/crystals/carbides/W2C.cif
/usr/share/avogadro2/crystals/carbides/WC.cif
/usr/share/avogadro2/crystals/carbonates
/usr/share/avogadro2/crystals/carbonates/CaCO3-Calcite.cif
/usr/share/avogadro2/crystals/carbonates/CaMgC2O6-Dolomite.cif
/usr/share/avogadro2/crystals/carbonates/Li2CO3-Zabuyelite.cif
/usr/share/avogadro2/crystals/carbonates/MgCO3-Magnesite.cif
/usr/share/avogadro2/crystals/carbonates/Na2CO3-Natrite.cif
/usr/share/avogadro2/crystals/clays
/usr/share/avogadro2/crystals/clays/Al2Si2O9H4-Dickite.cif
/usr/share/avogadro2/crystals/clays/Al2Si2O9H4-Kaolinite.cif
/usr/share/avogadro2/crystals/clays/Al2Si2O9H4-Nacrite.cif
/usr/share/avogadro2/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif
/usr/share/avogadro2/crystals/clays/Al4KSi2O12-Illite.cif
/usr/share/avogadro2/crystals/clays/AlSi2O6H-Pyrophyllite.cif
/usr/share/avogadro2/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif
/usr/share/avogadro2/crystals/clays/FeSi2O6H-Nontronite.cif
/usr/share/avogadro2/crystals/clays/Lepidolite.cif
/usr/share/avogadro2/crystals/clays/Mg2Al2SiO9H4-Amesite.cif
/usr/share/avogadro2/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif
/usr/share/avogadro2/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif
/usr/share/avogadro2/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif
/usr/share/avogadro2/crystals/clays/Zn2SiO5H2-Hemimorphite.cif
/usr/share/avogadro2/crystals/elements
/usr/share/avogadro2/crystals/elements/Ac-Actinium.cif
/usr/share/avogadro2/crystals/elements/Ag-Silver.cif
/usr/share/avogadro2/crystals/elements/Al-Aluminum.cif
/usr/share/avogadro2/crystals/elements/Am-Americium.cif
/usr/share/avogadro2/crystals/elements/Ar-Argon.cif
/usr/share/avogadro2/crystals/elements/As-Arsenic.cif
/usr/share/avogadro2/crystals/elements/As-Arsenolamprite.cif
/usr/share/avogadro2/crystals/elements/Au-Gold.cif
/usr/share/avogadro2/crystals/elements/B-Boron.cif
/usr/share/avogadro2/crystals/elements/Ba-Barium.cif
/usr/share/avogadro2/crystals/elements/Be-Beryllium.cif
/usr/share/avogadro2/crystals/elements/Bi-Bismuth.cif
/usr/share/avogadro2/crystals/elements/Br-Bromine.cif
/usr/share/avogadro2/crystals/elements/C-Diamond.cif
/usr/share/avogadro2/crystals/elements/C-Graphite.cif
/usr/share/avogadro2/crystals/elements/C-Lonsdaleite.cif
/usr/share/avogadro2/crystals/elements/Ca-Calcium-alpha.cif
/usr/share/avogadro2/crystals/elements/Ca-Calcium-beta.cif
/usr/share/avogadro2/crystals/elements/Ca-Calcium-gamma.cif
/usr/share/avogadro2/crystals/elements/Cd-Cadmium.cif
/usr/share/avogadro2/crystals/elements/Ce-Cerium.cif
/usr/share/avogadro2/crystals/elements/Cl-Chlorine.cif
/usr/share/avogadro2/crystals/elements/Co-Cobalt.cif
/usr/share/avogadro2/crystals/elements/Cr-Chromium.cif
/usr/share/avogadro2/crystals/elements/Cs-Cesium.cif
/usr/share/avogadro2/crystals/elements/Cu-Copper.cif
/usr/share/avogadro2/crystals/elements/Dy-Dysprosium.cif
/usr/share/avogadro2/crystals/elements/Er-Erbium.cif
/usr/share/avogadro2/crystals/elements/Eu-Europium.cif
/usr/share/avogadro2/crystals/elements/Fe-Iron-alpha.cif
/usr/share/avogadro2/crystals/elements/Fe-Iron-beta.cif
/usr/share/avogadro2/crystals/elements/Fe-Iron-delta.cif
/usr/share/avogadro2/crystals/elements/Fe-Iron-gamma.cif
/usr/share/avogadro2/crystals/elements/Ga-Gallium.cif
/usr/share/avogadro2/crystals/elements/Gd-Gadolinium.cif
/usr/share/avogadro2/crystals/elements/Ge-Germanium.cif
/usr/share/avogadro2/crystals/elements/He-Helium.cif
/usr/share/avogadro2/crystals/elements/Hf-Hafnium.cif
/usr/share/avogadro2/crystals/elements/Ho-Holmium.cif
/usr/share/avogadro2/crystals/elements/I-Iodine.cif
/usr/share/avogadro2/crystals/elements/In-Indium.cif
/usr/share/avogadro2/crystals/elements/Ir-Iridium.cif
/usr/share/avogadro2/crystals/elements/K-Potassium.cif
/usr/share/avogadro2/crystals/elements/Kr-Krypton.cif
/usr/share/avogadro2/crystals/elements/La-Lanthanum.cif
/usr/share/avogadro2/crystals/elements/Li-Lithium.cif
/usr/share/avogadro2/crystals/elements/Lu-Lutetium.cif
/usr/share/avogadro2/crystals/elements/Mg-Magnesium.cif
/usr/share/avogadro2/crystals/elements/Mn-Manganese-alpha.cif
/usr/share/avogadro2/crystals/elements/Mn-Manganese-delta.cif
/usr/share/avogadro2/crystals/elements/Mn-Manganese-gamma.cif
/usr/share/avogadro2/crystals/elements/Mo-Molybdenum.cif
/usr/share/avogadro2/crystals/elements/N-Nitrogen.cif
/usr/share/avogadro2/crystals/elements/Na-Sodium.cif
/usr/share/avogadro2/crystals/elements/Nb-Niobium.cif
/usr/share/avogadro2/crystals/elements/Nd-Neodymium.cif
/usr/share/avogadro2/crystals/elements/Ne-Neon.cif
/usr/share/avogadro2/crystals/elements/Ni-Nickel.cif
/usr/share/avogadro2/crystals/elements/Np-Neptunium-alpha.cif
/usr/share/avogadro2/crystals/elements/Np-Neptunium-beta.cif
/usr/share/avogadro2/crystals/elements/Np-Neptunium-gamma.cif
/usr/share/avogadro2/crystals/elements/Os-Osmium.cif
/usr/share/avogadro2/crystals/elements/P-Phosphorus-black.cif
/usr/share/avogadro2/crystals/elements/P-Phosphorus.cif
/usr/share/avogadro2/crystals/elements/Pb-Lead.cif
/usr/share/avogadro2/crystals/elements/Pd-Palladium.cif
/usr/share/avogadro2/crystals/elements/Pr-Praseodymium.cif
/usr/share/avogadro2/crystals/elements/Pt-Platinum.cif
/usr/share/avogadro2/crystals/elements/Pu-Plutonium-alpha.cif
/usr/share/avogadro2/crystals/elements/Pu-Plutonium-epsilon.cif
/usr/share/avogadro2/crystals/elements/Pu-Plutonium-gamma.cif
/usr/share/avogadro2/crystals/elements/Rb-Rubidium.cif
/usr/share/avogadro2/crystals/elements/Re-Rhenium.cif
/usr/share/avogadro2/crystals/elements/Rh-Rhodium.cif
/usr/share/avogadro2/crystals/elements/Ru-Ruthenium.cif
/usr/share/avogadro2/crystals/elements/S6-Sulfur.cif
/usr/share/avogadro2/crystals/elements/S8-Sulfur-alpha.cif
/usr/share/avogadro2/crystals/elements/S8-Sulfur-beta.cif
/usr/share/avogadro2/crystals/elements/S8-Sulfur-gamma.cif
/usr/share/avogadro2/crystals/elements/Sb-Antimony.cif
/usr/share/avogadro2/crystals/elements/Sc-Scandium.cif
/usr/share/avogadro2/crystals/elements/Se-Selenium.cif
/usr/share/avogadro2/crystals/elements/Si-Silicon.cif
/usr/share/avogadro2/crystals/elements/Sm-Samarium.cif
/usr/share/avogadro2/crystals/elements/Sn-Tin-alpha.cif
/usr/share/avogadro2/crystals/elements/Sn-Tin-beta.cif
/usr/share/avogadro2/crystals/elements/Sr-Strontium.cif
/usr/share/avogadro2/crystals/elements/Ta-Tantalum.cif
/usr/share/avogadro2/crystals/elements/Tb-Terbium.cif
/usr/share/avogadro2/crystals/elements/Te-Tellurium.cif
/usr/share/avogadro2/crystals/elements/Th-Thorium.cif
/usr/share/avogadro2/crystals/elements/Ti-Titanium-alpha.cif
/usr/share/avogadro2/crystals/elements/Ti-Titanium-beta.cif
/usr/share/avogadro2/crystals/elements/Tl-Thallium.cif
/usr/share/avogadro2/crystals/elements/Tm-Thulium.cif
/usr/share/avogadro2/crystals/elements/U-Uranium-alpha.cif
/usr/share/avogadro2/crystals/elements/U-Uranium-gamma.cif
/usr/share/avogadro2/crystals/elements/V-Vanadium.cif
/usr/share/avogadro2/crystals/elements/W-Tungsten.cif
/usr/share/avogadro2/crystals/elements/Xe-Xenon.cif
/usr/share/avogadro2/crystals/elements/Y-Yttrium.cif
/usr/share/avogadro2/crystals/elements/Yb-Ytterbium.cif
/usr/share/avogadro2/crystals/elements/Zn-Zinc.cif
/usr/share/avogadro2/crystals/elements/Zr-Zirconium.cif
/usr/share/avogadro2/crystals/halides
/usr/share/avogadro2/crystals/halides/AgBr-Bromargyrite.cif
/usr/share/avogadro2/crystals/halides/AgCl-Chlorargyrite.cif
/usr/share/avogadro2/crystals/halides/AlCl3.cif
/usr/share/avogadro2/crystals/halides/AlNa3F6-Cryolite.cif
/usr/share/avogadro2/crystals/halides/CaF2-Fluorite.cif
/usr/share/avogadro2/crystals/halides/CdCl2.cif
/usr/share/avogadro2/crystals/halides/CdI2.cif
/usr/share/avogadro2/crystals/halides/CrCl2.cif
/usr/share/avogadro2/crystals/halides/CrCl3.cif
/usr/share/avogadro2/crystals/halides/CsCl.cif
/usr/share/avogadro2/crystals/halides/FeCl3-Molysite.cif
/usr/share/avogadro2/crystals/halides/HgCl-Calomel.cif
/usr/share/avogadro2/crystals/halides/KBr.cif
/usr/share/avogadro2/crystals/halides/KCl-Sylvite.cif
/usr/share/avogadro2/crystals/halides/NaCl-Halite.cif
/usr/share/avogadro2/crystals/halides/PbFCl-Matlockite.cif
/usr/share/avogadro2/crystals/hydrides
/usr/share/avogadro2/crystals/hydrides/KH.cif
/usr/share/avogadro2/crystals/hydrides/LiH.cif
/usr/share/avogadro2/crystals/hydrides/NaH.cif
/usr/share/avogadro2/crystals/hydrides/PdH.cif
/usr/share/avogadro2/crystals/hydroxides
/usr/share/avogadro2/crystals/hydroxides/Ca(OH)2-Portlandite.cif
/usr/share/avogadro2/crystals/hydroxides/KOH.cif
/usr/share/avogadro2/crystals/hydroxides/LiOH.cif
/usr/share/avogadro2/crystals/hydroxides/Mg(OH)2-Brucite.cif
/usr/share/avogadro2/crystals/hydroxides/Ni(OH)2-Theophrastite.cif
/usr/share/avogadro2/crystals/ice
/usr/share/avogadro2/crystals/ice/H2O-Ice-II.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice-III.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice-IV.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice-Ih.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice-VI.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice-VII.cif
/usr/share/avogadro2/crystals/ice/H2O-Ice.cif
/usr/share/avogadro2/crystals/intermetallics
/usr/share/avogadro2/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif
/usr/share/avogadro2/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif
/usr/share/avogadro2/crystals/intermetallics/Au3Cu-Bogdanovite.cif
/usr/share/avogadro2/crystals/intermetallics/AuCu-Tetraauricupride.cif
/usr/share/avogadro2/crystals/intermetallics/BiPd-Sobolevskite.cif
/usr/share/avogadro2/crystals/intermetallics/CoFe-Wairauite.cif
/usr/share/avogadro2/crystals/intermetallics/Cu2MnAl-Heusler.cif
/usr/share/avogadro2/crystals/intermetallics/FePt-Tetraferroplatinum.cif
/usr/share/avogadro2/crystals/intermetallics/PtBi.cif
/usr/share/avogadro2/crystals/nitrides
/usr/share/avogadro2/crystals/nitrides/AlN.cif
/usr/share/avogadro2/crystals/nitrides/BN.cif
/usr/share/avogadro2/crystals/nitrides/GaN.cif
/usr/share/avogadro2/crystals/nitrides/InN.cif
/usr/share/avogadro2/crystals/nitrides/Si3N4-beta.cif
/usr/share/avogadro2/crystals/other
/usr/share/avogadro2/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif
/usr/share/avogadro2/crystals/other/C10H10Fe-Ferrocene.cif
/usr/share/avogadro2/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif
/usr/share/avogadro2/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif
/usr/share/avogadro2/crystals/other/FeMnO3-Bixbyite.cif
/usr/share/avogadro2/crystals/other/H3N-Ammonia.cif
/usr/share/avogadro2/crystals/other/LaAlO3.cif
/usr/share/avogadro2/crystals/other/LiNbO3-LithiumNiobate.cif
/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif
/usr/share/avogadro2/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif
/usr/share/avogadro2/crystals/other/YBa2Cu3O6.9-YBCO.cif
/usr/share/avogadro2/crystals/oxides
/usr/share/avogadro2/crystals/oxides/(MgAl2)O4-Spinel.cif
/usr/share/avogadro2/crystals/oxides/Ag2O.cif
/usr/share/avogadro2/crystals/oxides/AgO.cif
/usr/share/avogadro2/crystals/oxides/Al2O3-Corundum.cif
/usr/share/avogadro2/crystals/oxides/B2O3.cif
/usr/share/avogadro2/crystals/oxides/B6O.cif
/usr/share/avogadro2/crystals/oxides/BaO.cif
/usr/share/avogadro2/crystals/oxides/CaO-Lime.cif
/usr/share/avogadro2/crystals/oxides/CdO-Monteponite.cif
/usr/share/avogadro2/crystals/oxides/CeO2-Cerianite.cif
/usr/share/avogadro2/crystals/oxides/CoFe2O4.cif
/usr/share/avogadro2/crystals/oxides/CoO.cif
/usr/share/avogadro2/crystals/oxides/Cr2O3-Eskolaite.cif
/usr/share/avogadro2/crystals/oxides/Cu2O-Cuprite.cif
/usr/share/avogadro2/crystals/oxides/CuO-Tenorite.cif
/usr/share/avogadro2/crystals/oxides/Fe2O3-Hematite.cif
/usr/share/avogadro2/crystals/oxides/Fe3O4-Magnetite.cif
/usr/share/avogadro2/crystals/oxides/FeO-Wustite.cif
/usr/share/avogadro2/crystals/oxides/GeO2-Argutite-tetrag.cif
/usr/share/avogadro2/crystals/oxides/GeO2-Argutite.cif
/usr/share/avogadro2/crystals/oxides/GeO2.cif
/usr/share/avogadro2/crystals/oxides/HfO2.cif
/usr/share/avogadro2/crystals/oxides/In2O3-IndiumOxide.cif
/usr/share/avogadro2/crystals/oxides/In2O3.cif
/usr/share/avogadro2/crystals/oxides/IrO2.cif
/usr/share/avogadro2/crystals/oxides/K2O.cif
/usr/share/avogadro2/crystals/oxides/La2O3-LanthanumOxide-A.cif
/usr/share/avogadro2/crystals/oxides/Li2O.cif
/usr/share/avogadro2/crystals/oxides/MgO-Periclase.cif
/usr/share/avogadro2/crystals/oxides/MnO-Manganosite.cif
/usr/share/avogadro2/crystals/oxides/MnO2-Pyrolusite.cif
/usr/share/avogadro2/crystals/oxides/MoO2-Tugarinovite.cif
/usr/share/avogadro2/crystals/oxides/MoO3-Molybdite.cif
/usr/share/avogadro2/crystals/oxides/Na2O.cif
/usr/share/avogadro2/crystals/oxides/NbO.cif
/usr/share/avogadro2/crystals/oxides/NbO2.cif
/usr/share/avogadro2/crystals/oxides/NiFe2O4.cif
/usr/share/avogadro2/crystals/oxides/NiO-Bunsenite.cif
/usr/share/avogadro2/crystals/oxides/PbO.cif
/usr/share/avogadro2/crystals/oxides/PbO2-Scrutinyite.cif
/usr/share/avogadro2/crystals/oxides/PdO.cif
/usr/share/avogadro2/crystals/oxides/PtO2-beta.cif
/usr/share/avogadro2/crystals/oxides/Rb2O.cif
/usr/share/avogadro2/crystals/oxides/Rh2O3.cif
/usr/share/avogadro2/crystals/oxides/RuO2.cif
/usr/share/avogadro2/crystals/oxides/Sc2O3.cif
/usr/share/avogadro2/crystals/oxides/SiO2-Coesite.cif
/usr/share/avogadro2/crystals/oxides/SiO2-Cristobalite.cif
/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-alpha.cif
/usr/share/avogadro2/crystals/oxides/SiO2-Quartz-beta.cif
/usr/share/avogadro2/crystals/oxides/SiO2-Stishovite.cif
/usr/share/avogadro2/crystals/oxides/SmO.cif
/usr/share/avogadro2/crystals/oxides/SnO.cif
/usr/share/avogadro2/crystals/oxides/SnO2-Cassiterite.cif
/usr/share/avogadro2/crystals/oxides/SrO.cif
/usr/share/avogadro2/crystals/oxides/TaO.cif
/usr/share/avogadro2/crystals/oxides/TiO2-Anatase.cif
/usr/share/avogadro2/crystals/oxides/TiO2-Brookite.cif
/usr/share/avogadro2/crystals/oxides/TiO2-Rutile.cif
/usr/share/avogadro2/crystals/oxides/UO.cif
/usr/share/avogadro2/crystals/oxides/UO2-Uraninite.cif
/usr/share/avogadro2/crystals/oxides/V2O3-Karelianite.cif
/usr/share/avogadro2/crystals/oxides/V2O5-Shcherbinaite.cif
/usr/share/avogadro2/crystals/oxides/VO.cif
/usr/share/avogadro2/crystals/oxides/VO2.cif
/usr/share/avogadro2/crystals/oxides/WO2.cif
/usr/share/avogadro2/crystals/oxides/Y2O3.cif
/usr/share/avogadro2/crystals/oxides/YbO.cif
/usr/share/avogadro2/crystals/oxides/ZnO-Zincite.cif
/usr/share/avogadro2/crystals/oxides/ZrO.cif
/usr/share/avogadro2/crystals/oxides/ZrO2-Cubic.cif
/usr/share/avogadro2/crystals/phosphides
/usr/share/avogadro2/crystals/phosphides/AlP.cif
/usr/share/avogadro2/crystals/phosphides/BP.cif
/usr/share/avogadro2/crystals/phosphides/GaP.cif
/usr/share/avogadro2/crystals/phosphides/InP.cif
/usr/share/avogadro2/crystals/plugin.json
/usr/share/avogadro2/crystals/selenides
/usr/share/avogadro2/crystals/selenides/Bi2Se3.cif
/usr/share/avogadro2/crystals/selenides/BiSe.cif
/usr/share/avogadro2/crystals/selenides/CdSe-Cadmoselite.cif
/usr/share/avogadro2/crystals/selenides/HgSe-Tiemannite.cif
/usr/share/avogadro2/crystals/selenides/PbSe-Clausthalite.cif
/usr/share/avogadro2/crystals/selenides/Sb2Se3-Antimonselite.cif
/usr/share/avogadro2/crystals/selenides/ZnSe.cif
/usr/share/avogadro2/crystals/silicates
/usr/share/avogadro2/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif
/usr/share/avogadro2/crystals/sulfates
/usr/share/avogadro2/crystals/sulfates/BaSO4-Barite.cif
/usr/share/avogadro2/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif
/usr/share/avogadro2/crystals/sulfates/CaSO4-Anhydrite.cif
/usr/share/avogadro2/crystals/sulfates/CoSO4.cif
/usr/share/avogadro2/crystals/sulfates/CuSO4.cif
/usr/share/avogadro2/crystals/sulfates/MgSO4.cif
/usr/share/avogadro2/crystals/sulfates/PbSO4-Anglesite.cif
/usr/share/avogadro2/crystals/sulfates/SrSO4-Celestine.cif
/usr/share/avogadro2/crystals/sulfides
/usr/share/avogadro2/crystals/sulfides/Bi2S3-Bismuthinite.cif
/usr/share/avogadro2/crystals/sulfides/CdS-Greenockite.cif
/usr/share/avogadro2/crystals/sulfides/CdS-Hawleyite.cif
/usr/share/avogadro2/crystals/sulfides/FeS.cif
/usr/share/avogadro2/crystals/sulfides/FeS2-Pyrite.cif
/usr/share/avogadro2/crystals/sulfides/HgS-Metacinnabar.cif
/usr/share/avogadro2/crystals/sulfides/PbS-Galena.cif
/usr/share/avogadro2/crystals/sulfides/Sb2S3-Stibnite.cif
/usr/share/avogadro2/crystals/sulfides/SnS-Herzenbergite.cif
/usr/share/avogadro2/crystals/sulfides/ZnS-Sphalerite.cif
/usr/share/avogadro2/crystals/sulfides/ZnS-Wurtzite-2H.cif
/usr/share/avogadro2/crystals/sulfides/ZnS-Zincblende.cif
/usr/share/avogadro2/crystals/telurides
/usr/share/avogadro2/crystals/telurides/Bi2Te3.cif
/usr/share/avogadro2/crystals/telurides/BiTe.cif
/usr/share/avogadro2/crystals/telurides/CdTe.cif
/usr/share/avogadro2/crystals/telurides/PbTe-Altaite.cif
/usr/share/avogadro2/crystals/telurides/ZnTe.cif
/usr/share/avogadro2/crystals/titanates
/usr/share/avogadro2/crystals/titanates/BaTiO3.cif
/usr/share/avogadro2/crystals/titanates/CaTiO3-Perovskite.cif
/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif
/usr/share/avogadro2/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif
/usr/share/avogadro2/crystals/titanates/MgTiO3.cif
/usr/share/avogadro2/crystals/titanates/PbZr0.1Ti0.9O3.cif
/usr/share/avogadro2/crystals/titanates/SrTiO3-Tausonite.cif
/usr/share/avogadro2/crystals/zeolites
/usr/share/avogadro2/crystals/zeolites/ABW.cif
/usr/share/avogadro2/crystals/zeolites/ACO.cif
/usr/share/avogadro2/crystals/zeolites/AEI.cif
/usr/share/avogadro2/crystals/zeolites/AEL.cif
/usr/share/avogadro2/crystals/zeolites/AEN.cif
/usr/share/avogadro2/crystals/zeolites/AET.cif
/usr/share/avogadro2/crystals/zeolites/AFG.cif
/usr/share/avogadro2/crystals/zeolites/AFI.cif
/usr/share/avogadro2/crystals/zeolites/AFN.cif
/usr/share/avogadro2/crystals/zeolites/AFO.cif
/usr/share/avogadro2/crystals/zeolites/AFR.cif
/usr/share/avogadro2/crystals/zeolites/AFS.cif
/usr/share/avogadro2/crystals/zeolites/AFT.cif
/usr/share/avogadro2/crystals/zeolites/AFX.cif
/usr/share/avogadro2/crystals/zeolites/AFY.cif
/usr/share/avogadro2/crystals/zeolites/AHT.cif
/usr/share/avogadro2/crystals/zeolites/ANA.cif
/usr/share/avogadro2/crystals/zeolites/APC.cif
/usr/share/avogadro2/crystals/zeolites/APD.cif
/usr/share/avogadro2/crystals/zeolites/AST.cif
/usr/share/avogadro2/crystals/zeolites/ASV.cif
/usr/share/avogadro2/crystals/zeolites/ATN.cif
/usr/share/avogadro2/crystals/zeolites/ATO.cif
/usr/share/avogadro2/crystals/zeolites/ATS.cif
/usr/share/avogadro2/crystals/zeolites/ATT.cif
/usr/share/avogadro2/crystals/zeolites/ATV.cif
/usr/share/avogadro2/crystals/zeolites/AWO.cif
/usr/share/avogadro2/crystals/zeolites/AWW.cif
/usr/share/avogadro2/crystals/zeolites/BCT.cif
/usr/share/avogadro2/crystals/zeolites/BEA.cif
/usr/share/avogadro2/crystals/zeolites/BEC.cif
/usr/share/avogadro2/crystals/zeolites/BIK.cif
/usr/share/avogadro2/crystals/zeolites/BOF.cif
/usr/share/avogadro2/crystals/zeolites/BOG.cif
/usr/share/avogadro2/crystals/zeolites/BPH.cif
/usr/share/avogadro2/crystals/zeolites/BRE.cif
/usr/share/avogadro2/crystals/zeolites/BSV.cif
/usr/share/avogadro2/crystals/zeolites/CAN.cif
/usr/share/avogadro2/crystals/zeolites/CAS.cif
/usr/share/avogadro2/crystals/zeolites/CDO.cif
/usr/share/avogadro2/crystals/zeolites/CFI.cif
/usr/share/avogadro2/crystals/zeolites/CGF.cif
/usr/share/avogadro2/crystals/zeolites/CGS.cif
/usr/share/avogadro2/crystals/zeolites/CHA.cif
/usr/share/avogadro2/crystals/zeolites/CHI.cif
/usr/share/avogadro2/crystals/zeolites/CLO.cif
/usr/share/avogadro2/crystals/zeolites/CONt.cif
/usr/share/avogadro2/crystals/zeolites/CZP.cif
/usr/share/avogadro2/crystals/zeolites/DAC.cif
/usr/share/avogadro2/crystals/zeolites/DDR.cif
/usr/share/avogadro2/crystals/zeolites/DFO.cif
/usr/share/avogadro2/crystals/zeolites/DFT.cif
/usr/share/avogadro2/crystals/zeolites/DOH.cif
/usr/share/avogadro2/crystals/zeolites/DON.cif
/usr/share/avogadro2/crystals/zeolites/EAB.cif
/usr/share/avogadro2/crystals/zeolites/EDI.cif
/usr/share/avogadro2/crystals/zeolites/EMT.cif
/usr/share/avogadro2/crystals/zeolites/EON.cif
/usr/share/avogadro2/crystals/zeolites/EPI.cif
/usr/share/avogadro2/crystals/zeolites/ERI.cif
/usr/share/avogadro2/crystals/zeolites/ESV.cif
/usr/share/avogadro2/crystals/zeolites/ETR.cif
/usr/share/avogadro2/crystals/zeolites/EUO.cif
/usr/share/avogadro2/crystals/zeolites/EZT.cif
/usr/share/avogadro2/crystals/zeolites/FAR.cif
/usr/share/avogadro2/crystals/zeolites/FAU.cif
/usr/share/avogadro2/crystals/zeolites/FER.cif
/usr/share/avogadro2/crystals/zeolites/FRA.cif
/usr/share/avogadro2/crystals/zeolites/GIS.cif
/usr/share/avogadro2/crystals/zeolites/GIU.cif
/usr/share/avogadro2/crystals/zeolites/GME.cif
/usr/share/avogadro2/crystals/zeolites/GON.cif
/usr/share/avogadro2/crystals/zeolites/GOO.cif
/usr/share/avogadro2/crystals/zeolites/HEU.cif
/usr/share/avogadro2/crystals/zeolites/IFR.cif
/usr/share/avogadro2/crystals/zeolites/IHW.cif
/usr/share/avogadro2/crystals/zeolites/IMF.cif
/usr/share/avogadro2/crystals/zeolites/IRR.cif
/usr/share/avogadro2/crystals/zeolites/ISV.cif
/usr/share/avogadro2/crystals/zeolites/ITE.cif
/usr/share/avogadro2/crystals/zeolites/ITH.cif
/usr/share/avogadro2/crystals/zeolites/ITR.cif
/usr/share/avogadro2/crystals/zeolites/ITV.cif
/usr/share/avogadro2/crystals/zeolites/ITW.cif
/usr/share/avogadro2/crystals/zeolites/IWR.cif
/usr/share/avogadro2/crystals/zeolites/IWS.cif
/usr/share/avogadro2/crystals/zeolites/IWV.cif
/usr/share/avogadro2/crystals/zeolites/IWW.cif
/usr/share/avogadro2/crystals/zeolites/JBW.cif
/usr/share/avogadro2/crystals/zeolites/JRY.cif
/usr/share/avogadro2/crystals/zeolites/KFI.cif
/usr/share/avogadro2/crystals/zeolites/LAU.cif
/usr/share/avogadro2/crystals/zeolites/LEV.cif
/usr/share/avogadro2/crystals/zeolites/LIO.cif
/usr/share/avogadro2/crystals/zeolites/LIT.cif
/usr/share/avogadro2/crystals/zeolites/LOS.cif
/usr/share/avogadro2/crystals/zeolites/LOV.cif
/usr/share/avogadro2/crystals/zeolites/LTA.cif
/usr/share/avogadro2/crystals/zeolites/LTF.cif
/usr/share/avogadro2/crystals/zeolites/LTL.cif
/usr/share/avogadro2/crystals/zeolites/LTN.cif
/usr/share/avogadro2/crystals/zeolites/MAR.cif
/usr/share/avogadro2/crystals/zeolites/MAZ.cif
/usr/share/avogadro2/crystals/zeolites/MEI.cif
/usr/share/avogadro2/crystals/zeolites/MEL.cif
/usr/share/avogadro2/crystals/zeolites/MEP.cif
/usr/share/avogadro2/crystals/zeolites/MER.cif
/usr/share/avogadro2/crystals/zeolites/MFI.cif
/usr/share/avogadro2/crystals/zeolites/MFS.cif
/usr/share/avogadro2/crystals/zeolites/MON.cif
/usr/share/avogadro2/crystals/zeolites/MOR.cif
/usr/share/avogadro2/crystals/zeolites/MOZ.cif
/usr/share/avogadro2/crystals/zeolites/MRE.cif
/usr/share/avogadro2/crystals/zeolites/MSE.cif
/usr/share/avogadro2/crystals/zeolites/MSO.cif
/usr/share/avogadro2/crystals/zeolites/MTF.cif
/usr/share/avogadro2/crystals/zeolites/MTN.cif
/usr/share/avogadro2/crystals/zeolites/MTT.cif
/usr/share/avogadro2/crystals/zeolites/MTW.cif
/usr/share/avogadro2/crystals/zeolites/MVY.cif
/usr/share/avogadro2/crystals/zeolites/MWW.cif
/usr/share/avogadro2/crystals/zeolites/NAB.cif
/usr/share/avogadro2/crystals/zeolites/NAT.cif
/usr/share/avogadro2/crystals/zeolites/NES.cif
/usr/share/avogadro2/crystals/zeolites/NON.cif
/usr/share/avogadro2/crystals/zeolites/NPO.cif
/usr/share/avogadro2/crystals/zeolites/NSI.cif
/usr/share/avogadro2/crystals/zeolites/OBW.cif
/usr/share/avogadro2/crystals/zeolites/OFF.cif
/usr/share/avogadro2/crystals/zeolites/OSI.cif
/usr/share/avogadro2/crystals/zeolites/OSO.cif
/usr/share/avogadro2/crystals/zeolites/OWE.cif
/usr/share/avogadro2/crystals/zeolites/PAR.cif
/usr/share/avogadro2/crystals/zeolites/PAU.cif
/usr/share/avogadro2/crystals/zeolites/PHI.cif
/usr/share/avogadro2/crystals/zeolites/PON.cif
/usr/share/avogadro2/crystals/zeolites/PUN.cif
/usr/share/avogadro2/crystals/zeolites/RHO.cif
/usr/share/avogadro2/crystals/zeolites/RON.cif
/usr/share/avogadro2/crystals/zeolites/RRO.cif
/usr/share/avogadro2/crystals/zeolites/RSN.cif
/usr/share/avogadro2/crystals/zeolites/RTE.cif
/usr/share/avogadro2/crystals/zeolites/RTH.cif
/usr/share/avogadro2/crystals/zeolites/RUT.cif
/usr/share/avogadro2/crystals/zeolites/RWR.cif
/usr/share/avogadro2/crystals/zeolites/RWY.cif
/usr/share/avogadro2/crystals/zeolites/SAF.cif
/usr/share/avogadro2/crystals/zeolites/SAO.cif
/usr/share/avogadro2/crystals/zeolites/SAS.cif
/usr/share/avogadro2/crystals/zeolites/SAT.cif
/usr/share/avogadro2/crystals/zeolites/SAV.cif
/usr/share/avogadro2/crystals/zeolites/SBE.cif
/usr/share/avogadro2/crystals/zeolites/SBN.cif
/usr/share/avogadro2/crystals/zeolites/SBS.cif
/usr/share/avogadro2/crystals/zeolites/SBT.cif
/usr/share/avogadro2/crystals/zeolites/SFE.cif
/usr/share/avogadro2/crystals/zeolites/SFF.cif
/usr/share/avogadro2/crystals/zeolites/SFG.cif
/usr/share/avogadro2/crystals/zeolites/SFH.cif
/usr/share/avogadro2/crystals/zeolites/SFN.cif
/usr/share/avogadro2/crystals/zeolites/SFO.cif
/usr/share/avogadro2/crystals/zeolites/SFS.cif
/usr/share/avogadro2/crystals/zeolites/SGT.cif
/usr/share/avogadro2/crystals/zeolites/SIV.cif
/usr/share/avogadro2/crystals/zeolites/SOD.cif
/usr/share/avogadro2/crystals/zeolites/SOF.cif
/usr/share/avogadro2/crystals/zeolites/SOS.cif
/usr/share/avogadro2/crystals/zeolites/SSF.cif
/usr/share/avogadro2/crystals/zeolites/SSY.cif
/usr/share/avogadro2/crystals/zeolites/STF.cif
/usr/share/avogadro2/crystals/zeolites/STI.cif
/usr/share/avogadro2/crystals/zeolites/STO.cif
/usr/share/avogadro2/crystals/zeolites/STT.cif
/usr/share/avogadro2/crystals/zeolites/STW.cif
/usr/share/avogadro2/crystals/zeolites/SVR.cif
/usr/share/avogadro2/crystals/zeolites/SZR.cif
/usr/share/avogadro2/crystals/zeolites/TER.cif
/usr/share/avogadro2/crystals/zeolites/THO.cif
/usr/share/avogadro2/crystals/zeolites/TOL.cif
/usr/share/avogadro2/crystals/zeolites/TON.cif
/usr/share/avogadro2/crystals/zeolites/TSC.cif
/usr/share/avogadro2/crystals/zeolites/TUN.cif
/usr/share/avogadro2/crystals/zeolites/UEI.cif
/usr/share/avogadro2/crystals/zeolites/UFI.cif
/usr/share/avogadro2/crystals/zeolites/UOS.cif
/usr/share/avogadro2/crystals/zeolites/UOZ.cif
/usr/share/avogadro2/crystals/zeolites/USI.cif
/usr/share/avogadro2/crystals/zeolites/UTL.cif
/usr/share/avogadro2/crystals/zeolites/UWY.cif
/usr/share/avogadro2/crystals/zeolites/VET.cif
/usr/share/avogadro2/crystals/zeolites/VFI.cif
/usr/share/avogadro2/crystals/zeolites/VNI.cif
/usr/share/avogadro2/crystals/zeolites/VSV.cif
/usr/share/avogadro2/crystals/zeolites/WEI.cif
/usr/share/avogadro2/crystals/zeolites/WEN.cif
/usr/share/avogadro2/crystals/zeolites/YUG.cif
/usr/share/avogadro2/crystals/zeolites/ZON.cif
/usr/share/avogadro2/crystals/zeolites/ZSM-5.cif
/usr/share/doc/avogadro2-libs
/usr/share/doc/avogadro2-libs/README-avogenerators.md
/usr/share/doc/avogadro2-libs/README-libgwavi.md
/usr/share/doc/avogadro2-libs/README.md
/usr/share/licenses/avogadro2-libs
/usr/share/licenses/avogadro2-libs/LICENSE
/usr/share/licenses/avogadro2-libs/LICENSE-molecules
ghutchis commented 1 year ago

I'm not sure what the problem is .. They don't have antechamber installed. Should we just swallow error messages? In that case, no one will be able to debug scripts.

What's your suggestion? Not including scripts like this in the default install?

sagitter commented 1 year ago

What i observed is that this command is executed without error:

$ python3 /usr/lib64/avogadro2/scripts/charges/antechamber.py --help
usage: AM1-BCC partial charges [-h] [--display-name] [--metadata] [--charges] [--potential] [--lang [LANG]]

options:
  -h, --help      show this help message and exit
  --display-name
  --metadata
  --charges
  --potential
  --lang [LANG]

or

$ python3 /usr/lib64/avogadro2/scripts/charges/antechamber.py  --lang en_US
$

The error comes out when i use the --display-name option

ghutchis commented 1 year ago

The whole point is that antechamber isn't in the PATH so the script should fail.

Do you think there shouldn't be some sort of message?

What do you think the behavior should be instead?

github-actions[bot] commented 1 year ago

Here are the build results Avogadro2.AppImage macOS.dmg Ubuntu-Latest.tar.gz Win64.exe Artifacts will only be retained for 90 days.

github-actions[bot] commented 1 year ago

Here are the build results Avogadro2.AppImage macOS.dmg Ubuntu-Latest.tar.gz Win64.exe Artifacts will only be retained for 90 days.

avo-bot commented 1 year ago

This issue has been mentioned on Avogadro Discussion. There might be relevant details there:

https://discuss.avogadro.cc/t/errors-in-released-package-for-linux/4883/2