Open MartijnR opened 2 years ago
sh ./tools/benchmark-headless-pdf.sh
#!/bin/sh
INSTANCE="<data xmlns:OpenClinica=\"http://openclinica.com/odm\" xmlns:enk=\"http://enketo.org/xforms\" xmlns:jr=\"http://openrosa.org/javarosa\" xmlns:oc=\"http://openclinica.org/xforms\" xmlns:orx=\"http://openrosa.org/xforms\" id=\"LabsReconciliation\" version=\"1\"><LB><current_date>2021-02-07</current_date><event_date>18665.541666666664</event_date><todays_date/><creat_codes>38483-4 2160-0 2161-8</creat_codes><creat_max>18664.770833333332</creat_max><creat_reads><creat_repkey>37</creat_repkey><creatinine_raw>0.8</creatinine_raw><creat_unit_raw>mg/dL</creat_unit_raw><creat_ref_low_raw>.7</creat_ref_low_raw><creat_ref_high_raw>1.3</creat_ref_high_raw><creat_obsid_raw/><creat_eff_date>2021-02-06T18:30:00Z</creat_eff_date></creat_reads><eff_date1>2021-02-06</eff_date1><CREAT_COL>Y</CREAT_COL><creat_details><CREAT>0.8</CREAT><CREAT_UNIT>mg/dL</CREAT_UNIT><CREAT_REF_LOW>0.7</CREAT_REF_LOW><CREAT_REF_HIGH>1.3</CREAT_REF_HIGH><CREAT_OOR_CLIN_SIG/><CREAT_AE_NOTE/><CREAT_OBSID/><CREAT_comment oc:queryParent=\"CREAT\"/><CREAT_UNIT_comment oc:queryParent=\"CREAT_UNIT\"/><CREAT_REF_LOW_comment oc:queryParent=\"CREAT_REF_LOW\"/><CREAT_REF_HIGH_comment oc:queryParent=\"CREAT_REF_HIGH\"/><CREAT_OOR_CLIN_SIG_comment oc:queryParent=\"CREAT_OOR_CLIN_SIG\"/><CREAT_AE_NOTE_comment oc:queryParent=\"CREAT_AE_NOTE\"/><CREAT_OBSID_comment oc:queryParent=\"CREAT_OBSID\"/></creat_details><NOTE_CREAT/><ALT2_codes>1742-6 1743-4</ALT2_codes><ALT2_max>NaN</ALT2_max><ALT2_reads><ALT2_repkey/><ALT2_raw/><ALT2_unit_raw/><ALT2_ref_low_raw/><ALT2_ref_high_raw/><ALT2_obsid_raw/><ALT2_eff_date/></ALT2_reads><eff_date2/><ALT2_COL>N</ALT2_COL><ALT2_details><ALT2/><ALT2_UNIT/><ALT2_REF_LOW/><ALT2_REF_HIGH/><ALT2_OOR_CLIN_SIG/><ALT2_AE_NOTE/><ALT2_OBSID/><ALT2_comment oc:queryParent=\"ALT2\"/><ALT2_UNIT_comment oc:queryParent=\"ALT2_UNIT\"/><ALT2_REF_LOW_comment oc:queryParent=\"ALT2_REF_LOW\"/><ALT2_REF_HIGH_comment oc:queryParent=\"ALT2_REF_HIGH\"/><ALT2_OOR_CLIN_SIG_comment oc:queryParent=\"ALT2_OOR_CLIN_SIG\"/><ALT2_AE_NOTE_comment oc:queryParent=\"ALT2_AE_NOTE\"/><ALT2_OBSID_comment oc:queryParent=\"ALT2_OBSID\"/></ALT2_details><NOTE_ALT2/><AST_codes>1920-8</AST_codes><AST_max>NaN</AST_max><AST_reads><AST_repkey/><AST_raw/><AST_unit_raw/><AST_ref_low_raw/><AST_ref_high_raw/><AST_obsid_raw/><AST_eff_date/></AST_reads><eff_date3/><AST_COL>N</AST_COL><AST_details><AST/><AST_UNIT/><AST_REF_LOW/><AST_REF_HIGH/><AST_OOR_CLIN_SIG/><AST_AE_NOTE/><AST_OBSID/><AST_comment oc:queryParent=\"AST\"/><AST_UNIT_comment oc:queryParent=\"AST_UNIT\"/><AST_REF_LOW_comment oc:queryParent=\"AST_REF_LOW\"/><AST_REF_HIGH_comment oc:queryParent=\"AST_REF_HIGH\"/><AST_OOR_CLIN_SIG_comment oc:queryParent=\"AST_OOR_CLIN_SIG\"/><AST_AE_NOTE_comment oc:queryParent=\"AST_AE_NOTE\"/><AST_OBSID_comment oc:queryParent=\"AST_OBSID\"/></AST_details><NOTE_AST/><BILIRUBIN_codes>1975-2 1974-5 42719-5</BILIRUBIN_codes><BILIRUBIN_max>NaN</BILIRUBIN_max><BILIRUBIN_reads><BILIRUBIN_repkey/><BILIRUBIN_raw/><BILIRUBIN_unit_raw/><BILIRUBIN_ref_low_raw/><BILIRUBIN_ref_high_raw/><BILIRUBIN_obsid_raw/><BILIRUBIN_eff_date/></BILIRUBIN_reads><eff_date4/><BILIRUBIN_COL>N</BILIRUBIN_COL><BILIRUBIN_details><BILIRUBIN/><BILIRUBIN_UNIT/><BILIRUBIN_REF_LOW/><BILIRUBIN_REF_HIGH/><BILIRUBIN_OOR_CLIN_SIG/><BILIRUBIN_AE_NOTE/><BILIRUBIN_OBSID/><BILIRUBIN_comment oc:queryParent=\"BILIRUBIN\"/><BILIRUBIN_UNIT_comment oc:queryParent=\"BILIRUBIN_UNIT\"/><BILIRUBIN_REF_LOW_comment oc:queryParent=\"BILIRUBIN_REF_LOW\"/><BILIRUBIN_REF_HIGH_comment oc:queryParent=\"BILIRUBIN_REF_HIGH\"/><BILIRUBIN_OOR_CLIN_SIG_comment oc:queryParent=\"BILIRUBIN_OOR_CLIN_SIG\"/><BILIRUBIN_AE_NOTE_comment oc:queryParent=\"BILIRUBIN_AE_NOTE\"/><BILIRUBIN_OBSID_comment oc:queryParent=\"BILIRUBIN_OBSID\"/></BILIRUBIN_details><NOTE_BILIRUBIN/><ALP_codes>test</ALP_codes><ALP_max>NaN</ALP_max><ALP_reads><ALP_repkey/><ALP_raw/><ALP_unit_raw/><ALP_ref_low_raw/><ALP_ref_high_raw/><ALP_obsid_raw/><ALP_eff_date/></ALP_reads><eff_date5/><ALP_COL>N</ALP_COL><ALP_det><ALP/><ALP_UNIT/><ALP_REF_LOW/><ALP_REF_HIGH/><ALP_OOR_CLIN_SIG/><ALP_AE_NOTE/><ALP_OBSID/><ALP_comment oc:queryParent=\"ALP\"/><ALP_UNIT_comment oc:queryParent=\"ALP_UNIT\"/><ALP_REF_LOW_comment oc:queryParent=\"ALP_REF_LOW\"/><ALP_REF_HIGH_comment oc:queryParent=\"ALP_REF_HIGH\"/><ALP_OOR_CLIN_SIG_comment oc:queryParent=\"ALP_OOR_CLIN_SIG\"/><ALP_AE_NOTE_comment oc:queryParent=\"ALP_AE_NOTE\"/><ALP_OBSID_comment oc:queryParent=\"ALP_OBSID\"/></ALP_det><NOTE_ALP/><PLATELETS_codes>777-3 776-5 890-4 26515-7 1988-5 54413-0 9317-9 32623-1 8098-6 11039-5 5908-9 32146-3 8061-4 24471-5 34701-3 19066-0 14869-2 21027-8 3013-0 3284-7 75506-6 48593-8 56006-0 45370-4 43302-9 32208-1 38420-6 22759-5 5581-4 29997-4 2940-5</PLATELETS_codes><PLATELETS_max>NaN</PLATELETS_max><PLATELETS_reads><PLATELETS_repkey/><PLATELETS_raw/><PLATELETS_unit_raw/><PLATELETS_ref_low_raw/><PLATELETS_ref_high_raw/><PLATELETS_obsid_raw/><PLATELETS_eff_date/></PLATELETS_reads><eff_date6/><PLATELETS_COL>N</PLATELETS_COL><PLATELETS_det><PLATELETS/><PLATELETS_UNIT/><PLATELETS_REF_LOW/><PLATELETS_REF_HIGH/><PLATELETS_OOR_CLIN_SIG/><PLATELETS_AE_NOTE/><PLATELETS_OBSID/><PLATELETS_comment oc:queryParent=\"PLATELETS\"/><PLATELETS_UNIT_comment oc:queryParent=\"PLATELETS_UNIT\"/><PLATELETS_REF_LOW_comment oc:queryParent=\"PLATELETS_REF_LOW\"/><PLATELETS_REF_HIGH_comment oc:queryParent=\"PLATELETS_REF_HIGH\"/><PLATELETS_OOR_CLIN_SIG_comment oc:queryParent=\"PLATELETS_OOR_CLIN_SIG\"/><PLATELETS_AE_NOTE_comment oc:queryParent=\"PLATELETS_AE_NOTE\"/><PLATELETS_OBSID_comment oc:queryParent=\"PLATELETS_OBSID\"/></PLATELETS_det><NOTE_PLATELETS/><HEMATOCRIT_codes>4544-3 20570-8 42908-4 11153-4 4545-0</HEMATOCRIT_codes><HEMATOCRIT_max>18664.75</HEMATOCRIT_max><HEMATOCRIT_reads><HEMATOCRIT_repkey>12</HEMATOCRIT_repkey><HEMATOCRIT_raw>42.9</HEMATOCRIT_raw><HEMATOCRIT_unit_raw>%</HEMATOCRIT_unit_raw><HEMATOCRIT_ref_low_raw>Not Available</HEMATOCRIT_ref_low_raw><HEMATOCRIT_ref_high_raw>Not Available</HEMATOCRIT_ref_high_raw><HEMATOCRIT_obsid_raw>e4oeoPimAli1UeYP771m7V1xvVjJkgE7xQ2R3Z-TnwYPolqgvyWbCZK25O.Stoa0Y3</HEMATOCRIT_obsid_raw><HEMATOCRIT_eff_date>2021-02-06T18:00:00Z</HEMATOCRIT_eff_date></HEMATOCRIT_reads><eff_date7>2021-02-06</eff_date7><HEMATOCRIT_COL>Y</HEMATOCRIT_COL><HEMATOCRIT_det><HEMATOCRIT>42.9</HEMATOCRIT><HEMATOCRIT_UNIT>%</HEMATOCRIT_UNIT><HEMATOCRIT_REF_LOW/><HEMATOCRIT_REF_HIGH/><HEMATOCRIT_OOR_CLIN_SIG/><HEMATOCRIT_AE_NOTE/><HEMATOCRIT_OBSID>e4oeoPimAli1UeYP771m7V1xvVjJkgE7xQ2R3Z-TnwYPolqgvyWbCZK25O.Stoa0Y3</HEMATOCRIT_OBSID><HEMATOCRIT_comment oc:queryParent=\"HEMATOCRIT\"/><HEMATOCRIT_UNIT_comment oc:queryParent=\"HEMATOCRIT_UNIT\"/><HEMATOCRIT_REF_LOW_comment oc:queryParent=\"HEMATOCRIT_REF_LOW\"/><HEMATOCRIT_REF_HIGH_comment oc:queryParent=\"HEMATOCRIT_REF_HIGH\"/><HEMATOCRIT_OOR_CLIN_SIG_comment oc:queryParent=\"HEMATOCRIT_OOR_CLIN_SIG\"/><HEMATOCRIT_AE_NOTE_comment oc:queryParent=\"HEMATOCRIT_AE_NOTE\"/><HEMATOCRIT_OBSID_comment oc:queryParent=\"HEMATOCRIT_OBSID\"/></HEMATOCRIT_det><NOTE_HEMATOCRIT/><HGB_codes>718-7 785-6 786-4 55782-7 5794-3 57751-0 17856-6 4548-4 11559-2 725-2 17855-8 30391-7 4546-8 721-1 4552-6 4576-5 2614-6 20563-3 4625-0 49316-3 2615-3 2714-4 2030-5 30313-1 19225-2 13954-3 46740-7 4563-3 4551-8 42248-5 34660-1 2617-9 2716-9 2032-1 19227-8 19146-0 12710-0 9749-3 31157-1 15082-1 4575-7 20572-4 32683-5 5191-2 28067-7 41619-8 2616-1 2715-1 2031-3 55373-5 31156-3 49322-1 19226-0 2613-8 13514-5 13515-2 33509-1 33411-0</HGB_codes><HGB_max>18664.75</HGB_max><HGB_reads><HGB_repkey>9</HGB_repkey><HGB_raw>15</HGB_raw><HGB_unit_raw>g/dL</HGB_unit_raw><HGB_ref_low_raw>14</HGB_ref_low_raw><HGB_ref_high_raw>17</HGB_ref_high_raw><HGB_obsid_raw>e4oeoPimAli1UeYP771m7V1xvVjJkgE7xQ2R3Z-TnwYPl5bE9D-id3W0byUWCTzQB3</HGB_obsid_raw><HGB_eff_date>2021-02-06T18:00:00Z</HGB_eff_date></HGB_reads><eff_date8>2021-02-06</eff_date8><HGB_COL>Y</HGB_COL><HGB_det><HGB>15</HGB><HGB_UNIT>g/dL</HGB_UNIT><HGB_REF_LOW>14</HGB_REF_LOW><HGB_REF_HIGH>17</HGB_REF_HIGH><HGB_OOR_CLIN_SIG/><HGB_AE_NOTE/><HGB_OBSID>e4oeoPimAli1UeYP771m7V1xvVjJkgE7xQ2R3Z-TnwYPl5bE9D-id3W0byUWCTzQB3</HGB_OBSID><HGB_comment oc:queryParent=\"HGB\"/><HGB_UNIT_comment oc:queryParent=\"HGB_UNIT\"/><HGB_REF_LOW_comment oc:queryParent=\"HGB_REF_LOW\"/><HGB_REF_HIGH_comment oc:queryParent=\"HGB_REF_HIGH\"/><HGB_OOR_CLIN_SIG_comment oc:queryParent=\"HGB_OOR_CLIN_SIG\"/><HGB_AE_NOTE_comment oc:queryParent=\"HGB_AE_NOTE\"/><HGB_OBSID_comment oc:queryParent=\"HGB_OBSID\"/></HGB_det><NOTE_HGB/><WBC_codes>6690-2 26464-8 50774-9 26466-3 55792-6 47281-1 50957-0</WBC_codes><WBC_max>NaN</WBC_max><WBC_reads><WBC_repkey/><WBC_raw/><WBC_unit_raw/><WBC_ref_low_raw/><WBC_ref_high_raw/><WBC_obsid_raw/><WBC_eff_date/></WBC_reads><eff_date9/><WBC_COL>N</WBC_COL><WBC_det><WBC_COUNT/><WBC_UNIT/><WBC_REF_LOW/><WBC_REF_HIGH/><WBC_OOR_CLIN_SIG/><WBC_AE_NOTE/><WBC_OBSID/><WBC_COUNT_comment oc:queryParent=\"WBC_COUNT\"/><WBC_UNIT_comment oc:queryParent=\"WBC_UNIT\"/><WBC_REF_LOW_comment oc:queryParent=\"WBC_REF_LOW\"/><WBC_REF_HIGH_comment oc:queryParent=\"WBC_REF_HIGH\"/><WBC_OOR_CLIN_SIG_comment oc:queryParent=\"WBC_OOR_CLIN_SIG\"/><WBC_AE_NOTE_comment oc:queryParent=\"WBC_AE_NOTE\"/><WBC_OBSID_comment oc:queryParent=\"WBC_OBSID\"/></WBC_det><NOTE_WBC/><ABS_NEUTROPHIL_codes>test</ABS_NEUTROPHIL_codes><ABS_NEUTROPHIL_max>NaN</ABS_NEUTROPHIL_max><ABS_NEUTROPHIL_reads><ABS_NEUTROPHIL_repkey/><ABS_NEUTROPHIL_raw/><ABS_NEUTROPHIL_unit_raw/><ABS_NEUTROPHIL_ref_low_raw/><ABS_NEUTROPHIL_ref_high_raw/><ABS_NEUTROPHIL_obsid_raw/><ABS_NEUTROPHIL_eff_date/></ABS_NEUTROPHIL_reads><eff_date10/><ABS_NEUTROPHIL_COL>N</ABS_NEUTROPHIL_COL><ABS_NEUTROPHIL_det><ABS_NEUTROPHIL_COUNT/><ABS_NEUTROPHIL_UNIT/><ABS_NEUTROPHIL_REF_LOW/><ABS_NEUTROPHIL_REF_HIGH/><ABS_NEUTROPHIL_OOR_CLIN_SIG/><ABS_NEUTROPHIL_AE_NOTE/><ABS_NEUTROPHIL_OBSID/><ABS_NEUTROPHIL_COUNT_comment oc:queryParent=\"ABS_NEUTROPHIL_COUNT\"/><ABS_NEUTROPHIL_UNIT_comment oc:queryParent=\"ABS_NEUTROPHIL_UNIT\"/><ABS_NEUTROPHIL_REF_LOW_comment oc:queryParent=\"ABS_NEUTROPHIL_REF_LOW\"/><ABS_NEUTROPHIL_REF_HIGH_comment oc:queryParent=\"ABS_NEUTROPHIL_REF_HIGH\"/>\
<ABS_NEUTROPHIL_OOR_CLIN_SIG_comment oc:queryParent=\"ABS_NEUTROPHIL_OOR_CLIN_SIG\"/><ABS_NEUTROPHIL_AE_NOTE_comment oc:queryParent=\"ABS_NEUTROPHIL_AE_NOTE\"/><ABS_NEUTROPHIL_OBSID_comment oc:queryParent=\"ABS_NEUTROPHIL_OBSID\"/></ABS_NEUTROPHIL_det><NOTE_ABS_NEUTROPHIL/><LYMPHOCYTE_codes>731-0 736-9 732-8 26477-0 734-4</LYMPHOCYTE_codes><LYMPHOCYTE_max>NaN</LYMPHOCYTE_max><LYMPHOCYTE_reads><LYMPHOCYTE_repkey/><LYMPHOCYTE_raw/><LYMPHOCYTE_unit_raw/><LYMPHOCYTE_ref_low_raw/><LYMPHOCYTE_ref_high_raw/><LYMPHOCYTE_obsid_raw/><LYMPHOCYTE_eff_date/></LYMPHOCYTE_reads><eff_date11/><LYMPHOCYTE_COL>N</LYMPHOCYTE_COL><LYMPHOCYTE_det><LYMPHOCYTE_COUNT/><LYMPHOCYTE_UNIT/><LYMPHOCYTE_REF_LOW/><LYMPHOCYTE_REF_HIGH/><LYMPHOCYTE_OOR_CLIN_SIG/><LYMPHOCYTE_AE_NOTE/><LYMPHOCYTE_OBSID/><LYMPHOCYTE_COUNT_comment oc:queryParent=\"LYMPHOCYTE_COUNT\"/><LYMPHOCYTE_UNIT_comment oc:queryParent=\"LYMPHOCYTE_UNIT\"/><LYMPHOCYTE_REF_LOW_comment oc:queryParent=\"LYMPHOCYTE_REF_LOW\"/><LYMPHOCYTE_REF_HIGH_comment oc:queryParent=\"LYMPHOCYTE_REF_HIGH\"/><LYMPHOCYTE_OOR_CLIN_SIG_comment oc:queryParent=\"LYMPHOCYTE_OOR_CLIN_SIG\"/><LYMPHOCYTE_AE_NOTE_comment oc:queryParent=\"LYMPHOCYTE_AE_NOTE\"/><LYMPHOCYTE_OBSID_comment oc:queryParent=\"LYMPHOCYTE_OBSID\"/></LYMPHOCYTE_det><NOTE_Lymphocyte/><INR_codes>6301-6</INR_codes><INR_max>NaN</INR_max><INR_reads><INR_repkey/><INR_raw/><INR_unit_raw/><INR_ref_low_raw/><INR_ref_high_raw/><INR_obsid_raw/><INR_eff_date/></INR_reads><eff_date12/><INR_COL>N</INR_COL><INR_det><INR_D/><INR_UNIT/><INR_REF_LOW/><INR_REF_HIGH/><INR_OOR_CLIN_SIG/><INR_AE_NOTE/><INR_OBSID/><INR_D_comment oc:queryParent=\"INR_D\"/><INR_UNIT_comment oc:queryParent=\"INR_UNIT\"/><INR_REF_LOW_comment oc:queryParent=\"INR_REF_LOW\"/><INR_REF_HIGH_comment oc:queryParent=\"INR_REF_HIGH\"/><INR_OOR_CLIN_SIG_comment oc:queryParent=\"INR_OOR_CLIN_SIG\"/><INR_AE_NOTE_comment oc:queryParent=\"INR_AE_NOTE\"/><INR_OBSID_comment oc:queryParent=\"INR_OBSID\"/></INR_det><NOTE_INR/><PTT_codes>14979-9 24476-4 34571-0 24477-2 5946-9 43734-3 5949-3 69049-5 40100-0 33891-3 30323-0 12173-1 52134-4 33356-7 23198-5 5173-0 49058-1 1715-2 15361-9</PTT_codes><PTT_max>NaN</PTT_max><PTT_reads><PTT_repkey/><PTT_raw/><PTT_unit_raw/><PTT_ref_low_raw/><PTT_ref_high_raw/><PTT_obsid_raw/><PTT_eff_date/></PTT_reads><eff_date13/><PTT_COL_3>N</PTT_COL_3><PTT_det><PTT_3/><PTT_UNIT/><PTT_REF_LOW/><PTT_REF_HIGH/><PTT_OOR_CLIN_SIG/><PTT_AE_NOTE/><PTT_OBSID/><PTT_3_comment oc:queryParent=\"PTT_3\"/><PTT_UNIT_comment oc:queryParent=\"PTT_UNIT\"/><PTT_REF_LOW_comment oc:queryParent=\"PTT_REF_LOW\"/><PTT_REF_HIGH_comment oc:queryParent=\"PTT_REF_HIGH\"/><PTT_OOR_CLIN_SIG_comment oc:queryParent=\"PTT_OOR_CLIN_SIG\"/><PTT_AE_NOTE_comment oc:queryParent=\"PTT_AE_NOTE\"/><PTT_OBSID_comment oc:queryParent=\"PTT_OBSID\"/></PTT_det><NOTE_PTT/><DDIMER_codes>48065-7</DDIMER_codes><DDIMER_max>NaN</DDIMER_max><DDIMER_reads><DDIMER_repkey/><DDIMER_raw/><DDIMER_unit_raw/><DDIMER_ref_low_raw/><DDIMER_ref_high_raw/><DDIMER_obsid_raw/><DDIMER_eff_date/></DDIMER_reads><eff_date14/><DDIMER_COL_3>N</DDIMER_COL_3><DDIMER_det><DDIMER_3/><DDIMER_UNIT/><DDIMER_REF_LOW/><DDIMER_REF_HIGH/><DDIMER_OOR_CLIN_SIG/><DDIMER_AE_NOTE/><DDIMER_OBSID/><DDIMER_3_comment oc:queryParent=\"DDIMER_3\"/><DDIMER_UNIT_comment oc:queryParent=\"DDIMER_UNIT\"/><DDIMER_REF_LOW_comment oc:queryParent=\"DDIMER_REF_LOW\"/><DDIMER_REF_HIGH_comment oc:queryParent=\"DDIMER_REF_HIGH\"/><DDIMER_OOR_CLIN_SIG_comment oc:queryParent=\"DDIMER_OOR_CLIN_SIG\"/><DDIMER_AE_NOTE_comment oc:queryParent=\"DDIMER_AE_NOTE\"/><DDIMER_OBSID_comment oc:queryParent=\"DDIMER_OBSID\"/></DDIMER_det><NOTE_DDIMER/><CRP_codes>1988-5 30522-7 11039-5</CRP_codes><CRP_max>NaN</CRP_max><CRP_reads><CRP_repkey/><CRP_raw/><CRP_unit_raw/><CRP_ref_low_raw/><CRP_ref_high_raw/><CRP_obsid_raw/><CRP_eff_date/></CRP_reads><eff_date15/><CRP_COL_3>N</CRP_COL_3><CRP_det><CRP_3/><CRP_UNIT/><CRP_REF_LOW/><CRP_REF_HIGH/><CRP_OOR_CLIN_SIG/><CRP_AE_NOTE/><CRP_OBSID/><CRP_3_comment oc:queryParent=\"CRP_3\"/><CRP_UNIT_comment oc:queryParent=\"CRP_UNIT\"/><CRP_REF_LOW_comment oc:queryParent=\"CRP_REF_LOW\"/><CRP_REF_HIGH_comment oc:queryParent=\"CRP_REF_HIGH\"/><CRP_OOR_CLIN_SIG_comment oc:queryParent=\"CRP_OOR_CLIN_SIG\"/><CRP_AE_NOTE_comment oc:queryParent=\"CRP_AE_NOTE\"/><CRP_OBSID_comment oc:queryParent=\"CRP_OBSID\"/></CRP_det><NOTE_CRP/><BNP_codes>42637-9 33762-6 30934-4</BNP_codes><BNP_max>NaN</BNP_max><BNP_read><BNP_repkey/><BNP_raw/><BNP_unit_raw/><BNP_ref_low_raw/><BNP_ref_high_raw/><BNP_obsid_raw/><BNP_eff_date/></BNP_read><eff_date16/><BNP_COL_3>N</BNP_COL_3><BNP_det><BNP_3/><BNP_UNIT/><BNP_REF_LOW/><BNP_REF_HIGH/><BNP_OOR_CLIN_SIG/><BNP_AE_NOTE/><BNP_OBSID/><BNP_3_comment oc:queryParent=\"BNP_3\"/><BNP_UNIT_comment oc:queryParent=\"BNP_UNIT\"/><BNP_REF_LOW_comment oc:queryParent=\"BNP_REF_LOW\"/><BNP_REF_HIGH_comment oc:queryParent=\"BNP_REF_HIGH\"/><BNP_OOR_CLIN_SIG_comment oc:queryParent=\"BNP_OOR_CLIN_SIG\"/><BNP_AE_NOTE_comment oc:queryParent=\"BNP_AE_NOTE\"/><BNP_OBSID_comment oc:queryParent=\"BNP_OBSID\"/></BNP_det><NOTE_BNP/><TROPONIN_I_codes>test</TROPONIN_I_codes><TROPONIN_I_max>NaN</TROPONIN_I_max><TROPONIN_I_read><TROPONIN_I_repkey/><TROPONIN_I_raw/><TROPONIN_I_unit_raw/><TROPONIN_I_ref_low_raw/><TROPONIN_I_ref_high_raw/><TROPONIN_I_obsid_raw/><TROPONIN_I_eff_date/></TROPONIN_I_read><eff_date17/><TROPONIN_I_COL_3>N</TROPONIN_I_COL_3><TROPONIN_I_det><TROPONIN_I_3/><TROPONIN_I_UNIT/><TROPONIN_I_REF_LOW/><TROPONIN_I_REF_HIGH/><TROPONIN_I_OOR_CLIN_SIG/><TROPONIN_I_AE_NOTE/><TROPONIN_I_OBSID/><TROPONIN_I_3_comment oc:queryParent=\"TROPONIN_I_3\"/><TROPONIN_I_UNIT_comment oc:queryParent=\"TROPONIN_I_UNIT\"/><TROPONIN_I_REF_LOW_comment oc:queryParent=\"TROPONIN_I_REF_LOW\"/><TROPONIN_I_REF_HIGH_comment oc:queryParent=\"TROPONIN_I_REF_HIGH\"/><TROPONIN_I_OOR_CLIN_SIG_comment oc:queryParent=\"TROPONIN_I_OOR_CLIN_SIG\"/><TROPONIN_I_AE_NOTE_comment oc:queryParent=\"TROPONIN_I_AE_NOTE\"/><TROPONIN_I_OBSID_comment oc:queryParent=\"TROPONIN_I_OBSID\"/></TROPONIN_I_det><NOTE_T2/><TROPONIN_T_codes>test</TROPONIN_T_codes><TROPONIN_T_max>NaN</TROPONIN_T_max><TROPONIN_T_read><TROPONIN_T_repkey/><TROPONIN_T_raw/><TROPONIN_T_unit_raw/><TROPONIN_T_ref_low_raw/><TROPONIN_T_ref_high_raw/><TROPONIN_T_obsid_raw/><TROPONIN_T_eff_date/></TROPONIN_T_read><eff_date18/><TROPONIN_T_COL_3>N</TROPONIN_T_COL_3><TROPONIN_T_det><TROPONIN_T_3/><TROPONIN_T_UNIT/><TROPONIN_T_REF_LOW/><TROPONIN_T_REF_HIGH/><TROPONIN_T_OOR_CLIN_SIG/><TROPONIN_T_AE_NOTE/><TROPONIN_T_OBSID/><TROPONIN_T_3_comment oc:queryParent=\"TROPONIN_T_3\"/><TROPONIN_T_UNIT_comment oc:queryParent=\"TROPONIN_T_UNIT\"/><TROPONIN_T_REF_LOW_comment oc:queryParent=\"TROPONIN_T_REF_LOW\"/><TROPONIN_T_REF_HIGH_comment oc:queryParent=\"TROPONIN_T_REF_HIGH\"/><TROPONIN_T_OOR_CLIN_SIG_comment oc:queryParent=\"TROPONIN_T_OOR_CLIN_SIG\"/><TROPONIN_T_AE_NOTE_comment oc:queryParent=\"TROPONIN_T_AE_NOTE\"/><TROPONIN_T_OBSID_comment oc:queryParent=\"TROPONIN_T_OBSID\"/></TROPONIN_T_det><NOTE_T3/><TROPONIN_I_HS_codes>test</TROPONIN_I_HS_codes><TROPONIN_I_HS_max>NaN</TROPONIN_I_HS_max><TROPONIN_I_HS_read><TROPONIN_I_HS_repkey/><TROPONIN_I_HS_raw/><TROPONIN_I_HS_unit_raw/><TROPONIN_I_HS_ref_low_raw/><TROPONIN_I_HS_ref_high_raw/><TROPONIN_I_HS_obsid_raw/><TROPONIN_I_HS_eff_date/></TROPONIN_I_HS_read><eff_date19/><TROPONIN_I_HS_COL_3>N</TROPONIN_I_HS_COL_3><TROPONIN_I_HS_det><TROPONIN_I_HS_3/><TROPONIN_I_HS_UNIT/><TROPONIN_I_HS_REF_LOW/><TROPONIN_I_HS_REF_HIGH/><TROPONIN_I_HS_OOR_CLIN_SIG/><TROPONIN_I_HS_AE_NOTE/><TROPONIN_I_HS_OBSID/><TROPONIN_I_HS_3_comment oc:queryParent=\"TROPONIN_I_HS_3\"/><TROPONIN_I_HS_UNIT_comment oc:queryParent=\"TROPONIN_I_HS_UNIT\"/><TROPONIN_I_HS_REF_LOW_comment oc:queryParent=\"TROPONIN_I_HS_REF_LOW\"/><TROPONIN_I_HS_REF_HIGH_comment oc:queryParent=\"TROPONIN_I_HS_REF_HIGH\"/><TROPONIN_I_HS_OOR_CLIN_SIG_comment oc:queryParent=\"TROPONIN_I_HS_OOR_CLIN_SIG\"/><TROPONIN_I_HS_AE_NOTE_comment oc:queryParent=\"TROPONIN_I_HS_AE_NOTE\"/><TROPONIN_I_HS_OBSID_comment oc:queryParent=\"TROPONIN_I_HS_OBSID\"/></TROPONIN_I_HS_det><NOTE_T4/><TROPONIN_T_HS_codes>test</TROPONIN_T_HS_codes><TROPONIN_T_HS_max>NaN</TROPONIN_T_HS_max><TROPONIN_T_reads><TROPONIN_T_HS_repkey/><TROPONIN_T_HS_raw/><TROPONIN_T_HS_unit_raw/><TROPONIN_T_HS_ref_low_raw/><TROPONIN_T_HS_ref_high_raw/><TROPONIN_T_HS_obsid_raw/><TROPONIN_T_HS_eff_date/></TROPONIN_T_reads><eff_date20/><TROPONIN_T_HS_COL_3>N</TROPONIN_T_HS_COL_3><TROPONIN_T_HS_det><TROPONIN_T_HS_3/><TROPONIN_T_HS_UNIT/><TROPONIN_T_HS_REF_LOW/><TROPONIN_T_HS_REF_HIGH/><TROPONIN_T_HS_OOR_CLIN_SIG/><TROPONIN_T_HS_AE_NOTE/><TROPONIN_T_HS_OBSID/><TROPONIN_T_HS_3_comment oc:queryParent=\"TROPONIN_T_HS_3\"/><TROPONIN_T_HS_UNIT_comment oc:queryParent=\"TROPONIN_T_HS_UNIT\"/><TROPONIN_T_HS_REF_LOW_comment oc:queryParent=\"TROPONIN_T_HS_REF_LOW\"/><TROPONIN_T_HS_REF_HIGH_comment oc:queryParent=\"TROPONIN_T_HS_REF_HIGH\"/><TROPONIN_T_HS_OOR_CLIN_SIG_comment oc:queryParent=\"TROPONIN_T_HS_OOR_CLIN_SIG\"/><TROPONIN_T_HS_AE_NOTE_comment oc:queryParent=\"TROPONIN_T_HS_AE_NOTE\"/><TROPONIN_T_HS_OBSID_comment oc:queryParent=\"TROPONIN_T_HS_OBSID\"/></TROPONIN_T_HS_det><NOTE_T5/><BICARBONATE_codes>1959-6 14627-4 1961-2</BICARBONATE_codes><BICARBONATE_max>18664.75</BICARBONATE_max><BIRCARBONATE_reads><BICARBONATE_repkey>22</BICARBONATE_repkey><BICARBONATE_raw>20</BICARBONATE_raw><BICARBONATE_unit_raw>mmol/L</BICARBONATE_unit_raw><BICARBONATE_ref_low_raw>22</BICARBONATE_ref_low_raw><BICARBONATE_ref_high_raw>29</BICARBONATE_ref_high_raw><BICARBONATE_obsid_raw>eLC4nibeNSsSWD6dUd8yRwhwKOft87zpwsBj2huz1i0xdEnzZ7gCv9tepIhkZG01b3</BICARBONATE_obsid_raw><BICARBONATE_eff_date>2021-02-06T18:00:00Z</BICARBONATE_eff_date></BIRCARBONATE_reads><eff_date21>2021-02-06</eff_date21><BICARBONATE_COL_3>Y</BICARBONATE_COL_3><BICARBONATE_det><BICARBONATE_3>20</BICARBONATE_3><BICARBONATE_UNIT>mmol/L</BICARBONATE_UNIT><BICARBONATE_REF_LOW>22</BICARBONATE_REF_LOW><BICARBONATE_REF_HIGH>29</BICARBONATE_REF_HIGH><BICARBONATE_OOR_CLIN_SIG/><BICARBONATE_AE_NOTE/><BICARBONATE_OBSID>eLC4nibeNSsSWD6dUd8yRwhwKOft87zpwsBj2huz1i0xdEnzZ7gCv9tepIhkZG01b3</BICARBONATE_OBSID>\
<BICARBONATE_3_comment oc:queryParent=\"BICARBONATE_3\"/><BICARBONATE_UNIT_comment oc:queryParent=\"BICARBONATE_UNIT\"/><BICARBONATE_REF_LOW_comment oc:queryParent=\"BICARBONATE_REF_LOW\"/><BICARBONATE_REF_HIGH_comment oc:queryParent=\"BICARBONATE_REF_HIGH\"/><BICARBONATE_OOR_CLIN_SIG_comment oc:queryParent=\"BICARBONATE_OOR_CLIN_SIG\"/><BICARBONATE_AE_NOTE_comment oc:queryParent=\"BICARBONATE_AE_NOTE\"/><BICARBONATE_OBSID_comment oc:queryParent=\"BICARBONATE_OBSID\"/></BICARBONATE_det><NOTE_BICARB/><POS_CULTURE_codes>test</POS_CULTURE_codes><POS_CULTURE_max>NaN</POS_CULTURE_max><POS_CULTURE_reads><POS_CULTURE_repkey/><POS_CULTURE_raw/><POS_CULTURE_unit_raw/><POS_CULTURE_ref_low_raw/><POS_CULTURE_ref_high_raw/><POS_CULTURE_obsid_raw/><POS_CULTURE_eff_date/></POS_CULTURE_reads><eff_date22/><POS_CULTURE_COL_3>N</POS_CULTURE_COL_3><POS_CULTURE_det><POS_CULTURE_3/><POS_CULTURE_UNIT/><POS_CULTURE_REF_LOW/><POS_CULTURE_REF_HIGH/><POS_CULTURE_OOR_CLIN_SIG/><POS_CULTURE_AE_NOTE/><POS_CULTURE_OBSID/><POS_CULTURE_3_comment oc:queryParent=\"POS_CULTURE_3\"/><POS_CULTURE_UNIT_comment oc:queryParent=\"POS_CULTURE_UNIT\"/><POS_CULTURE_REF_LOW_comment oc:queryParent=\"POS_CULTURE_REF_LOW\"/><POS_CULTURE_REF_HIGH_comment oc:queryParent=\"POS_CULTURE_REF_HIGH\"/><POS_CULTURE_OOR_CLIN_SIG_comment oc:queryParent=\"POS_CULTURE_OOR_CLIN_SIG\"/><POS_CULTURE_AE_NOTE_comment oc:queryParent=\"POS_CULTURE_AE_NOTE\"/><POS_CULTURE_OBSID_comment oc:queryParent=\"POS_CULTURE_OBSID\"/></POS_CULTURE_det><todays_date_comment oc:queryParent=\"todays_date\"/><eff_date1_comment oc:queryParent=\"eff_date1\"/><CREAT_COL_comment oc:queryParent=\"CREAT_COL\"/><NOTE_CREAT_comment oc:queryParent=\"NOTE_CREAT\"/><eff_date2_comment oc:queryParent=\"eff_date2\"/><ALT2_COL_comment oc:queryParent=\"ALT2_COL\"/><NOTE_ALT2_comment oc:queryParent=\"NOTE_ALT2\"/><eff_date3_comment oc:queryParent=\"eff_date3\"/><AST_COL_comment oc:queryParent=\"AST_COL\"/><NOTE_AST_comment oc:queryParent=\"NOTE_AST\"/><eff_date4_comment oc:queryParent=\"eff_date4\"/><BILIRUBIN_COL_comment oc:queryParent=\"BILIRUBIN_COL\"/><NOTE_BILIRUBIN_comment oc:queryParent=\"NOTE_BILIRUBIN\"/><eff_date5_comment oc:queryParent=\"eff_date5\"/><ALP_COL_comment oc:queryParent=\"ALP_COL\"/><NOTE_ALP_comment oc:queryParent=\"NOTE_ALP\"/><eff_date6_comment oc:queryParent=\"eff_date6\"/><PLATELETS_COL_comment oc:queryParent=\"PLATELETS_COL\"/><NOTE_PLATELETS_comment oc:queryParent=\"NOTE_PLATELETS\"/><eff_date7_comment oc:queryParent=\"eff_date7\"/><HEMATOCRIT_COL_comment oc:queryParent=\"HEMATOCRIT_COL\"/><NOTE_HEMATOCRIT_comment oc:queryParent=\"NOTE_HEMATOCRIT\"/><eff_date8_comment oc:queryParent=\"eff_date8\"/><HGB_COL_comment oc:queryParent=\"HGB_COL\"/><NOTE_HGB_comment oc:queryParent=\"NOTE_HGB\"/><eff_date9_comment oc:queryParent=\"eff_date9\"/><WBC_COL_comment oc:queryParent=\"WBC_COL\"/><NOTE_WBC_comment oc:queryParent=\"NOTE_WBC\"/><eff_date10_comment oc:queryParent=\"eff_date10\"/><ABS_NEUTROPHIL_COL_comment oc:queryParent=\"ABS_NEUTROPHIL_COL\"/><NOTE_ABS_NEUTROPHIL_comment oc:queryParent=\"NOTE_ABS_NEUTROPHIL\"/><eff_date11_comment oc:queryParent=\"eff_date11\"/><LYMPHOCYTE_COL_comment oc:queryParent=\"LYMPHOCYTE_COL\"/><NOTE_Lymphocyte_comment oc:queryParent=\"NOTE_Lymphocyte\"/><eff_date12_comment oc:queryParent=\"eff_date12\"/><INR_COL_comment oc:queryParent=\"INR_COL\"/><NOTE_INR_comment oc:queryParent=\"NOTE_INR\"/><eff_date13_comment oc:queryParent=\"eff_date13\"/><PTT_COL_3_comment oc:queryParent=\"PTT_COL_3\"/><NOTE_PTT_comment oc:queryParent=\"NOTE_PTT\"/><eff_date14_comment oc:queryParent=\"eff_date14\"/><DDIMER_COL_3_comment oc:queryParent=\"DDIMER_COL_3\"/><NOTE_DDIMER_comment oc:queryParent=\"NOTE_DDIMER\"/><eff_date15_comment oc:queryParent=\"eff_date15\"/><CRP_COL_3_comment oc:queryParent=\"CRP_COL_3\"/><NOTE_CRP_comment oc:queryParent=\"NOTE_CRP\"/><eff_date16_comment oc:queryParent=\"eff_date16\"/><BNP_COL_3_comment oc:queryParent=\"BNP_COL_3\"/><NOTE_BNP_comment oc:queryParent=\"NOTE_BNP\"/><eff_date17_comment oc:queryParent=\"eff_date17\"/><TROPONIN_I_COL_3_comment oc:queryParent=\"TROPONIN_I_COL_3\"/><NOTE_T2_comment oc:queryParent=\"NOTE_T2\"/><eff_date18_comment oc:queryParent=\"eff_date18\"/><TROPONIN_T_COL_3_comment oc:queryParent=\"TROPONIN_T_COL_3\"/><NOTE_T3_comment oc:queryParent=\"NOTE_T3\"/><eff_date19_comment oc:queryParent=\"eff_date19\"/><TROPONIN_I_HS_COL_3_comment oc:queryParent=\"TROPONIN_I_HS_COL_3\"/><NOTE_T4_comment oc:queryParent=\"NOTE_T4\"/><eff_date20_comment oc:queryParent=\"eff_date20\"/><TROPONIN_T_HS_COL_3_comment oc:queryParent=\"TROPONIN_T_HS_COL_3\"/><NOTE_T5_comment oc:queryParent=\"NOTE_T5\"/><eff_date21_comment oc:queryParent=\"eff_date21\"/><BICARBONATE_COL_3_comment oc:queryParent=\"BICARBONATE_COL_3\"/><NOTE_BICARB_comment oc:queryParent=\"NOTE_BICARB\"/><eff_date22_comment oc:queryParent=\"eff_date22\"/><POS_CULTURE_COL_3_comment oc:queryParent=\"POS_CULTURE_COL_3\"/></LB><meta><instanceID>uuid:4a251e89-95b2-49cf-a6df-a6a552c4ee3d</instanceID></meta></data>"
TIMEFORMAT='It took %R seconds.'
time {
for i in {1..32}
do
curl --user enketorules: -d "server_url=http://localhost:3000&form_id=LabsReconciliation&ecid=a&instance=${INSTANCE}&instance_id={$i}a" http://localhost:8005/oc/api/v1/instance/view/pdf &
pids[${i}]=$!
done
for pid in ${pids[*]}
do
wait $pid
done
}
@MartijnR we are also seeing the following timeout error when calling the endpoint to generate PDF. Would this error also be resolved by your optimizations done for headless sessions?
{<EOL> "message": "PDF generation failed: waiting for Page.printToPDF failed: t imeout 30000ms exceeded"<EOL>}
No, I don't think so. But I'll look into this issue.
On Tue, Aug 30, 2022 at 4:55 PM svadla-oc @.***> wrote:
@MartijnR https://github.com/MartijnR we are also seeing the following timeout error when calling the endpoint to generate PDF. Would this error also be resolved by your optimizations done for headless sessions? {
"message": "PDF generation failed: waiting for Page.printToPDF failed: t imeout 30000ms exceeded" } — Reply to this email directly, view it on GitHub https://github.com/OpenClinica/enketo-oc/issues/69, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAEZFFSRBDG7MKJJP5PP5ODV3ZYLDANCNFSM56I65KUQ . You are receiving this because you were mentioned.Message ID: @.***>
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Enketo https://enketo.org | LinkedIn http://www.linkedin.com/company/enketo-llc | GitHub https://github.com/enketo | Twitter https://twitter.com/enketo | Blog http://blog.enketo.org
-- -- Revolutionizing data collection since 2012.
Enketo https://enketo.org/ | LinkedIn http://www.linkedin.com/company/enketo-llc | GitHub https://github.com/enketo | Twitter https://twitter.com/enketo | Blog http://blog.enketo.org/
I cannot really reproduce PDF issues, but made some improvements in branch fix/pdf-timeout-586
. This is built on top of the current master. If you are able to reproduce PDF issues, it would be great if you could test this branch @svadla-oc.
rebase with latest master and let OC test from branch
@MartijnR - Some of our forms will still fail under the 30 second PDF timeout unless there are dramatic performance improvements. For example, some problematic forms are taking about 60 seconds to open the print window in Chrome on my computer.
I did some research and this seems to be an issue others have run into: https://stackoverflow.com/questions/69436420/how-to-increase-timeout-for-pupetteers-page-pdf-when-getting-timeouterror-wai
It looks like this timeout can be controlled here: https://github.com/puppeteer/puppeteer/blob/main/docs/api/puppeteer.pdfoptions.timeout.md
Is this something we'd need an entirely new build to lengthen the timeout for (probably to 120 or 300 seconds)?
I see that's what I used in that branch together with another improvement in August (but I couldn't reproduce the issue so I couldn't test the fix and it needs a PR in enketo/enketo-express after verification). I used the timeout value as set in config.json
Let me rebase that branch with the latest master so you can test fix/pdf-timeout-586
.
maybe better to wait for this to be approved first: https://github.com/OpenClinica/enketo-express-oc/pull/646
@MartijnR - Thanks. Is there any way to increase that timeout without a new build? We have a user in Production that is unable to print some forms due to this timeout and we're hoping we can unblock prior to our upcoming release.
strictly speaking this change won't require a new 'build' because it takes place on the server, but it will require adding a commit with that change, so updating your application
quick hardcoded patch in production branch:
after line 105, create new line in https://github.com/OpenClinica/enketo-express-oc/blob/master/app/lib/pdf.js with:
timeout: 300000,
We have hardcoded this to 300 seconds for now. We want it to use the existing configuration for headless mode so that we can change it more easily if needed.
Describe the bug Even though the config item
headless.timeout
is set to 300 seconds, requests for PDFs time out at 120 seconds.Additional context It looks like there are several places where a default timeout could be used. The setting is only used for loading the page. The pdf generation itself seems the most likely.