OpenDroneMap / FIELDimageR

FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.
GNU General Public License v2.0
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Problems with FIELDImageR Installation #56

Open mfm2174 opened 7 months ago

mfm2174 commented 7 months ago

I need help with the installation of FIELDimage package.

I followed all the instructions and I could download everything, unfortunately today I was unable to run FIELDimageR and I had to remove all the packages related to it.

Now, I’m trying to download everything and it appears the following messages with DEVTOOLS:

devtools::install_github(“OpenDroneMap/FIELDimageR”) devtools::install_github(“filipematias23/FIELDimageR”)

ERROR: dependency ‘EBImage’ is not available for package ‘FIELDimageR’

removing ‘C:/Users/Maggie/AppData/Local/R/win-library/4.3/FIELDimageR’ Warning message: In i.p(…) : installation of package ‘C:/Users/Maggie/AppData/Local/Temp/Rtmpwn6zds/file22cc5f8f3d78/FIELDimageR_0.6.0.tar.gz’ had non-zero exit status In the other site, when I try to install: FIELDimageR_0.6.0.tar.gz (FIELDimageR_0.1.6) and (FIELDimageR_0.4.1) appears the following message:

install.packages(“FIELDimageR_0.6.0.tar.gz”, repos = NULL, type=“source”)

Installing package into ‘C:/Users/Maggie/AppData/Local/R/win-library/4.3’ (as ‘lib’ is unspecified) ERROR: dependency ‘EBImage’ is not available for package ‘FIELDimageR’

removing ‘C:/Users/Maggie/AppData/Local/R/win-library/4.3/FIELDimageR’ Warning in install.packages : installation of package ‘FIELDimageR_0.6.0.tar.gz’ had non-zero exit status

Even devtools is givin problems, unable to download it.

I’m still working on it. I tried with several R versions and even downloaded LINUX MINT in order to work with DOCKER. But I’m at home right now and my internet is not soo good. When I come back to the lab I’ll work on it, but I’m seriously looking for other options, because that package had given a lot of problems to many people. It is an excellent job but unfortunately it’s unsustainable to work like that.

filipematias23 commented 7 months ago

Hi there, yyou need to install "EBImage": https://bioconductor.org/packages/release/bioc/html/EBImage.html

Here is the code:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("EBImage") devtools::install_github(“OpenDroneMap/FIELDimageR”) devtools::install_github(“filipematias23/FIELDimageR”)

You may need to install some other packages... Check in the error msg about missing package "...". One example is the package 'caret' that always ask people to download it first!

Hope it helps!

mfm2174 commented 7 months ago

Hi,

I still have the problem, see the error message:

tentando a URL 'https://cloud.r-project.org/src/contrib/DescTools_0.99.51.tar.gz' Content type 'application/x-gzip' length 2644614 bytes (2.5 MB)

downloaded 2.5 MB

ERROR: failed to lock directory ‘/home/mfm2174/R/x86_64-pc-linux-gnu-library/4.1’ for modifying Try removing ‘/home/mfm2174/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-terra’

ERROR: compilation failed for package ‘DescTools’

I'm trying to download DescTools from Linux prompt but I'm having problems.