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OpenDroneMap / ODM

A command line toolkit to generate maps, point clouds, 3D models and DEMs from drone, balloon or kite images. 📷
https://opendronemap.org
GNU Affero General Public License v3.0
4.72k stars 1.08k forks source link

Error code 256 no module named csfm #217

Closed DapperFactory closed 8 years ago

DapperFactory commented 8 years ago

Hello everyone, Iv been working on getting ODM to run using the python run.py command within the directory of images. Initially I had some trouble with a few other dependency that went away after downloading and install opensfm.

Now I get a new error, when trying to import csfm. Is there another way I can install this??

Here is the error:

2015-12-01 12:37:31,469 Extracting focal lengths for image DSC_0817.JPG Traceback (most recent call last): File "/home/wes/Repos/OpenDroneMap/src/OpenSfM/bin/detect_features", line 11, in from opensfm import features File "/home/wes/Repos/OpenDroneMap/src/OpenSfM/opensfm/features.py", line 12, in import csfm ImportError: No module named csfm b

quitting cause: PYTHONPATH=/home/wes/Repos/OpenDroneMap/lib/python2.7/dist-packages "/home/wes/Repos/OpenDroneMap/src/OpenSfM/bin/run_all" opensfm returned with code 256.

Much thanks!!

paulinus commented 8 years ago

It looks like opensfm has not been build. That is why csfm is missing.

Can you try doing

cd /home/wes/Repos/OpenDroneMap/src/OpenSfM
python setup.py build
DapperFactory commented 8 years ago

Thanks for the reply!

So I have already tried that... :( To clarify, do I need to manually install OpenSfm via the DockerFile. If so what is the proper way to go about this. I ran $docker build . inside /home/wes/Repos/OpenDroneMap/src/OpenSfM

which completed without errors. And then I ran the $python setup.py build

paulinus commented 8 years ago

You don't need to run docker at all for OpenDroneMap. Just python setup.py build. If that completes without errors it will generate the file src/OpenSfM/opensfm/csfm, which is the one missing.

Did you run install.sh to install OpenDroneMap? It should have done the step above by itself.

DapperFactory commented 8 years ago

Yes the first thing I ran was the install.sh script.

However, when I run it, it does not throw any errors but it does not print "script finished" at the end. See below: Thanks for your help :) !! sudo ./install.sh 

 created by Daniel Schwarz/daniel.schwarz@topoi.org
 released under Creative Commons/CC-BY
 Attribution

 if the script doesn't finish properly
 (i.e. it doesn't print "script finished" at the end)
 please email me the content of the logs folder
- updating
- installing

The directory '/home/wes/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag. The directory '/home/wes/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag. Requirement already satisfied (use --upgrade to upgrade): networkx in /usr/local/lib/python2.7/dist-packages Requirement already satisfied (use --upgrade to upgrade): exifread in /usr/local/lib/python2.7/dist-packages Requirement already satisfied (use --upgrade to upgrade): xmltodict in /usr/local/lib/python2.7/dist-packages Requirement already satisfied (use --upgrade to upgrade): decorator>=3.4.0 in /usr/lib/python2.7/dist-packages (from networkx)

getting the sources

< done - Tue Dec 1 12:40:03 EST 2015

- cleaning graclus
- building graclus

< done - Tue Dec 1 12:40:11 EST 2015

poisson surface reconstruction

  • building poisson surface reconstruction < done - Tue Dec 1 12:40:14 EST 2015

parallel

  • configuring parallel
  • building paralel < done - Tue Dec 1 12:40:16 EST 2015

clapack

  • building clapack
  • installing clapack < done - Tue Dec 1 12:40:21 EST 2015

vlfeat

  • installing vlfeat < done - Tue Dec 1 12:40:21 EST 2015

LAStools

  • installing LAStools < done - Tue Dec 1 12:40:42 EST 2015

cmvs/pmvs

  • cleaning cmvs
  • building cmvs
  • make depend cmvs < done - Tue Dec 1 12:40:51 EST 2015

ceres

  • configuring ceres
  • building ceres < done - Tue Dec 1 12:41:45 EST 2015

bundler

  • cleaning bundler
  • building bundler < done - Tue Dec 1 12:42:00 EST 2015

pcl

  • configuring pcl
  • building and installing pcl < done - Tue Dec 1 12:48:41 EST 2015

meshing

  • configuring odm_meshing
  • building odm_meshing < done - Tue Dec 1 12:48:50 EST 2015

texturing

  • configuring odm_texturing
  • building odm_texturing wes@wes-devbox:~/Repos/OpenDroneMap$ ls
DapperFactory commented 8 years ago

Looking at the output a second time: ... The directory '/home/wes/.cache/pip/http' or its parent directory is not owned by the current user and the cache has been disabled. Please check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag. The directory '/home/wes/.cache/pip' or its parent directory is not owned by the current user and caching wheels has been disabled. check the permissions and owner of that directory. If executing pip with sudo, you may want sudo's -H flag. ... Could this be what the problem is?

paulinus commented 8 years ago

From the log above, it seems that texturing build failed. Can you paste the contents of logs/odm_texturing_2_build.log here?

DapperFactory commented 8 years ago

logs/odm_texturing_2_build.log

Scanning dependencies of target odm_texturing [ 25%] [ 50%] [ 75%] [100%] Building CXX object CMakeFiles/odm_texturing.dir/src/main.cpp.o Building CXX object CMakeFiles/odm_texturing.dir/src/Logger.cpp.o Building CXX object CMakeFiles/odm_texturing.dir/src/OdmTexturing.cpp.o Building CXX object CMakeFiles/odm_texturing.dir/src/modifiedPclFunctions.cpp.o Linking CXX executable odm_texturing CMakeFiles/odm_texturing.dir/src/OdmTexturing.cpp.o: In function OdmTexturing::loadCameras()': OdmTexturing.cpp:(.text+0x3812): undefined reference tocv::imread(cv::String const&, int)' CMakeFiles/odm_texturing.dir/src/OdmTexturing.cpp.o: In function OdmTexturing::createTextures()': OdmTexturing.cpp:(.text+0x782e): undefined reference tocv::imread(cv::String const&, int)' OdmTexturing.cpp:(.text+0x7dd4): undefined reference to cv::imwrite(cv::String const&, cv::_InputArray const&, std::vector<int, std::allocator<int> > const&)' OdmTexturing.cpp:(.text+0x805b): undefined reference tocv::imwrite(cv::String const&, cv::_InputArray const&, std::vector<int, std::allocator > const&)' collect2: error: ld returned 1 exit status make[2]: * [odm_texturing] Error 1 make[1]: * [CMakeFiles/odm_texturing.dir/all] Error 2 make: *\ [all] Error 2

paulinus commented 8 years ago

It seems the linker is not finding opencv. It is estrange since install.sh should install it. Are you using ubuntu 14.04?

DapperFactory commented 8 years ago

Yes I am using ubuntu 14.04 and can successfully import cv2 into python projects. I also had opencv3 installed and running correctly. Is opencv supposed to reside somewhere specific? I followed this guid: http://www.pyimagesearch.com/2015/06/22/install-opencv-3-0-and-python-2-7-on-ubuntu/

This is also a fresh install of ubuntu, just 2 days old with the goal of being dedicated to opencv and tools like ODM. I have also successfully built opencv3 with Cuda and ran demos with that so I am pretty certain OpenCV is working.

paulinus commented 8 years ago

install.sh will install ubuntu's opencv package. That puts opencv2 libs in /usr/lib/x86_64-linux-gnu.

It might be happening that the build is mixing opencv2 and opencv3 if you have both installed.

You can tell cmake to look for opencv in a particular folder by modifying the line https://github.com/OpenDroneMap/OpenDroneMap/blob/gh-pages/install.sh#L468 For example,

cmake . -DPCL_DIR="$TOOLS_LIB_PATH/pcl" -DOPENCV_DIR="/usr/lib/x86_64-linux-gnu" > "$TOOLS_LOG_PATH/odm_texturing_1_build.log" 2>&1```
DapperFactory commented 8 years ago

So I should point it to where that is located inside opencv2, correct?

cmake looks like this is all relative on where its looking for dependencies.

Does installing opencv via install.sh set a system environment variable ?

I just looked at the apt-get-install.log .... python-opencv is already the newest version. ...

I'm guess this might be referring to opencv3?

Do you know if the cmake is trying to install opencv2 via; python-opencv

DapperFactory commented 8 years ago

update: I added the -DOPENCV_DIR="/usr/lib/x86_64-linux-gnu" > "$TOOLS_LOG_PATH/odm_texturing_1_build.log" 2>&1

but still have the same error inside the log file.

Inside the root directory of OpenDroneMap the version of opencv that is called when importing it with python is 2.4.8.

running a grep commands inside /usr/lib/x86_64-linux-gnu/: Does not seem to return anything related to opencv, however Im not sure if that is an accurate way of determining if the install.sh is in fact install opencv correctly.

DapperFactory commented 8 years ago

Problem solved & and the morral of the story is do not use OpenCV3

the resulting error: undefined reference to cv::imread(cv::String const&, int)' seemed to be from "imread was moved to opencv_imgcodecs. Try to add -lopencv_imgcodecs to linker flags."

In any case I tried over and over again to compiled the odm_texture by its self and noticed that even with the correct flag DOPENCV_DIR the error still occurred.

Solution: $cd /ROOT_OPENCV3/build/ $make uninstall Download & install OpenCV-2.4.11

I would not have gotten as far without your help Paulinus !! Thanks!!

paulinus commented 8 years ago

different opencv versions are a bit of a pain. We will support opencv3 at some point though. happy to hear that it works for you!

dakotabenjamin commented 8 years ago

Referring to #210, I'm going to push towards having more control over the opencv version in ODM. I can work on getting that in this week.

w0rcy commented 8 years ago

I am having this same "No module named csfm" issue on 14.04.4. This is a fresh Ubuntu installation with a fresh installation of ODM. This must all work if you have all of the history installed as time went by, but I cannot get this to work as it currently exists. Perhaps if I could understand exactly where and what this means to actually do

-Solution: -$cd /ROOT_OPENCV3/build/ $make uninstall -Download & install OpenCV-2.4.11

then I could hack a solution in, but this package does not work the way it is.

Could someone explain this fix a little more and maybe see if the stuff in the package as it exists is actually is what is thought to be there?

dakotabenjamin commented 8 years ago

If you don't have OpenCV 3 installed, then this issue does not apply to you. I think this issue conflated two separate issues. Would you mind opening a new issue and posting your install logs for opensfm?

profprofgit commented 8 years ago

u just need to update the CMakeList.txt file as follows:

We need to add absolute path of installed opencv libraries.

target_link_libraries(odm_orthophoto ${PCL_COMMON_LIBRARIES} ${PCL_IO_LIBRARIES} ${PCL_SURFACE_LIBRARIES} ${OpenCV_LIBS} /usr/local/lib/libopencv_core.so.3.1.0 /usr/local/lib/libopencv_core.so.3.1 /usr/local/lib/libopencv_flann.so.3.1.0 /usr/local/lib/libopencv_flann.so.3.1 /usr/local/lib/libopencv_imgproc.so.3.1.0 /usr/local/lib/libopencv_imgproc.so.3.1 /usr/local/lib/libopencv_ml.so.3.1.0 /usr/local/lib/libopencv_ml.so.3.1 /usr/local/lib/libopencv_photo.so.3.1.0 /usr/local/lib/libopencv_photo.so.3.1 /usr/local/lib/libopencv_video.so.3.1.0 /usr/local/lib/libopencv_video.so.3.1 /usr/local/lib/libopencv_imgcodecs.so.3.1.0 /usr/local/lib/libopencv_imgcodecs.so.3.1 /usr/local/lib/libopencv_shape.so.3.1.0 /usr/local/lib/libopencv_shape.so.3.1 /usr/local/lib/libopencv_videoio.so.3.1.0 /usr/local/lib/libopencv_videoio.so.3.1 /usr/local/lib/libopencv_highgui.so.3.1.0 /usr/local/lib/libopencv_highgui.so.3.1 /usr/local/lib/libopencv_objdetect.so.3.1.0 /usr/local/lib/libopencv_objdetect.so.3.1 /usr/local/lib/libopencv_superres.so.3.1.0 /usr/local/lib/libopencv_superres.so.3.1 /usr/local/lib/libopencv_features2d.so.3.1.0 /usr/local/lib/libopencv_features2d.so.3.1 /usr/local/lib/libopencv_calib3d.so.3.1.0 /usr/local/lib/libopencv_calib3d.so.3.1 /usr/local/lib/libopencv_stitching.so.3.1.0 /usr/local/lib/libopencv_stitching.so.3.1 /usr/local/lib/libopencv_videostab.so.3.1.0 /usr/local/lib/libopencv_videostab.so.3.1)

This will insert all the mentioned depenedant libraries in link.txt file.

Make sure you do this when all tar/zip file gets unzipped in the install.sh file.