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OpenFreeEnergy / ExampleNotebooks

Notebooks demonstrating how to do simple tasks related to free energy calculations.
MIT License
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should we still reference Perses in showcase notebook? #165

Open atravitz opened 1 month ago

atravitz commented 1 month ago

When I first ran the showcase notebook without any contextual knowledge, I was confused as to why behavior was described as "Perses-like", since the Perses homepage comes with a big "under development" disclaimer.

I now understand that OpenFE borrowed from Perses, but for a new user I think this is more distracting than it is helpful. I suggest we rephrase or remove these references for the sake of clarity.

IAlibay commented 1 month ago

I think rephrasing would be good, but we need a good way to acknowledge our peers whose work we use in OpenFE. This would be a really good thing to bring up at the next protocol devs meeting!