directory structure and file names as in the template
filled in system preparation details in the PREPARATION_DETAILS.md file
preparation details make sense and are sufficiently detailed to be able to reproduce it
added a PDB file with the protein named protein.pdb
removed any cofactors from the PDB file and placed them in cofactors.sdf
kept cystallographic waters and metals in the PDB file
amino acids have the same protonation states as in the original structure prepped by Ross et al.
copied over the ligands SDF file to a file named ligands.sdf and removed any duplicate binding modes or protonation states, keeping the more favorable state
We need a set of instructions for reviewers of submitted inputs