Epic: Refactor repository

OpenFreeEnergy / konnektor

Algorithms for various Network Layouts and Tooling for planning FE Calculations

https://konnektor.readthedocs.io/

MIT License

14 stars 3 forks source link

Closed RiesBen closed 6 months ago

RiesBen commented 9 months ago

Here i need help from the team, giving feeback on repo structures and names

Todos:

[x] Refactor algorithms folder (remove them and merge the files into the folder structure)
[x] is the Graph generator and bi-partite graph concatentor seperation needed?

RiesBen commented 9 months ago

Current Thoughts on the Generator vs. Concatenator question.

theoretic view: they solve different problems. One builds graphs, the other generates bi-partite matchings.

practical thoughts:

pro:
- the Separation makes it easier to directly describe what they do.
- you can use multiple simple tools to achieve more complex networks
con:
- users need to understand the difference/tools.

currently still thinking about this.