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OpenGene
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AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
MIT License
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My bioconda install Python version
#45
RichardBJ
opened
1 year ago
0
bubble
#44
yinbinqiu
opened
2 years ago
0
String index out of range.
#43
mquijano1
opened
2 years ago
1
Remove overrepresented sequences
#42
manuelsmendoza
opened
4 years ago
0
Error despite creating env with 2.7 in conda
#41
sankadinesh
opened
4 years ago
0
AKRNAseq
#40
kajeet1305
opened
4 years ago
0
AfterQC in FASTQ joined
#39
fabianomenegidio
opened
5 years ago
0
Float division by zero in circledetector.py
#38
slw287r
closed
4 years ago
0
AfterQC total bases calculation
#37
pbravakos
opened
6 years ago
1
question about AfterQC/preprocesser.py
#36
emojinchuan
opened
6 years ago
0
Read length distributon after processing
#35
coolmak32
opened
6 years ago
7
Issue with overlap analysis
#34
ghost
opened
6 years ago
4
Afterqc with pypy
#33
coolmak32
opened
6 years ago
3
Explicitly close the overlap read files to generate proper gzip file endings
#32
atcg
closed
6 years ago
1
filter only for poly-X but nothing else
#31
avilella
closed
6 years ago
9
output files are truncated
#30
hhg7
opened
6 years ago
0
Report
#29
hoppmann
opened
6 years ago
0
AterQc
#28
coolmak32
opened
6 years ago
2
ValueError: max() arg is an empty sequence
#27
hovans
opened
6 years ago
3
output gzipped data
#26
billzt
opened
7 years ago
3
Tool to keep reads where all bases are above a specific quality score.
#25
max0479
opened
7 years ago
2
Removal of PCR/RNA primers
#24
AmaliT
opened
7 years ago
1
Packaging: make available on Pypi/conda
#23
matthdsm
closed
6 years ago
7
Wrong (low quality) bases in overlapped regions failed to be corrected
#22
drna
opened
7 years ago
4
Python 2 is a requirement?
#21
lachlansimpson
closed
7 years ago
2
support bzip2 format
#20
sfchen
closed
7 years ago
1
add Dockerfile
#19
joshle
closed
7 years ago
0
1) AfterQC is slow 2)Aggregate results from many samples into a single report
#18
gk-bioin4m8x
opened
7 years ago
18
Float division by zero in circledetector.py
#17
alnf
closed
7 years ago
2
Adapters trimming
#16
alnf
opened
7 years ago
10
Deafult multiprocessing behavior
#15
alnf
closed
7 years ago
2
Pack (gzip) output good and bad reads
#14
serge2016
opened
7 years ago
4
Parallel mode for one pair of reads
#13
serge2016
opened
7 years ago
0
default good folder
#12
serge2016
opened
7 years ago
3
Specify output folder name
#11
alezanalp
opened
7 years ago
10
AttributeError: 'tuple' object has no attribute 'major'
#10
sunnvor
closed
8 years ago
7
fix shebang line
#9
spock
closed
8 years ago
3
extra whitespace before shebang line in after.py
#8
spock
closed
8 years ago
0
multithreading
#7
KField-Bucknell
closed
1 year ago
5
Plans for reading .gz ?
#6
colindaven
closed
8 years ago
2
File exists: './QC'
#5
stephenturner
closed
8 years ago
5
Overlap merge can be optimized
#4
sfchen
closed
8 years ago
1
TODO: change trimming function to make trimmed read1/read2 have identical length
#3
sfchen
closed
8 years ago
1
TODO: integrate pair-end sequencing based error correction
#2
sfchen
closed
8 years ago
1
Too slow with python implementation
#1
sfchen
closed
8 years ago
1