Open deb0612 opened 3 years ago
Dear sir, I tried to apply genefuse to our RNA-seq with known fusion gene. Somehow we couldn't find any fusion gene. command I used: genefuse -r hg19.fa -f druggable.hg19.csv -1 A2076_FFPE_RNA_S1_L001_R1_001.fastq.gz" -2 A2076_FFPE_RNA_S1_L001_R2_001.fastq.gz" -h A2076_FFPE_RNA.html > A2076_FFPE_RNA.result 14:39:27 start with 4 threads 14:39:51 mapper indexing done 14:39:55 sequence number before filtering: 45 14:39:55 removeByComplexity: 0 14:39:55 removeByDistance: 22 14:39:55 removeIndels: 2 14:41:14 matcher indexing done 14:41:14 removeAlignables: 3 14:41:14 found 0 fusions 14:41:16 done What your suggestion to apply genefuse to RNA-seq ?
Dear sir, I tried to apply genefuse to our RNA-seq with known fusion gene. Somehow we couldn't find any fusion gene. command I used: genefuse -r hg19.fa -f druggable.hg19.csv -1 A2076_FFPE_RNA_S1_L001_R1_001.fastq.gz" -2 A2076_FFPE_RNA_S1_L001_R2_001.fastq.gz" -h A2076_FFPE_RNA.html > A2076_FFPE_RNA.result 14:39:27 start with 4 threads 14:39:51 mapper indexing done 14:39:55 sequence number before filtering: 45 14:39:55 removeByComplexity: 0 14:39:55 removeByDistance: 22 14:39:55 removeIndels: 2 14:41:14 matcher indexing done 14:41:14 removeAlignables: 3 14:41:14 found 0 fusions 14:41:16 done What your suggestion to apply genefuse to RNA-seq ?