Closed gudeqing closed 1 year ago
Command example with vep-annotated VCF as input: mutscan -1 R1.fq.gz -2 R2.fq.gz -m VEP.vcf -r ref.a outputs:
mutscan -1 R1.fq.gz -2 R2.fq.gz -m VEP.vcf -r ref.a
No mutation to be scanned Your VCF contains no valid records
So I conclude that there must be something is wrong. However, when raw vcf is used, no such warning but empty results.
Command example with vep-annotated VCF as input:
mutscan -1 R1.fq.gz -2 R2.fq.gz -m VEP.vcf -r ref.aoutputs:So I conclude that there must be something is wrong. However, when raw vcf is used, no such warning but empty results.