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OpenGene / OpenGene.jl

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
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Sam/bam IO #3

Closed zhmz90 closed 8 years ago

zhmz90 commented 8 years ago

I will try to implement sam and bam file IO. Maybe need one week or two.

sfchen commented 8 years ago

Great!

Create a sambam folder under src/IO/

For bam, suggest to wrap a C library like htslib or bamtools

zhmz90 commented 8 years ago

That's a good idea. I chose wrapping htslib because I tried before.

sfchen commented 8 years ago

That's good, you can take a look at rust-htslib first

https://github.com/rust-bio/rust-htslib

sfchen commented 8 years ago

You can also take a look at pysam https://github.com/pysam-developers/pysam

zhmz90 commented 8 years ago

I am going to spend a week or ten days to learn the codes of current wrappers.