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OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
MIT License
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fastp:UMI #187

Open fanyucai1 opened 5 years ago

fanyucai1 commented 5 years ago

I use fastp to process UMI per_read, as follows: @A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA_GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

But I use Illumina bcl2fastq to process UMI ,as follows: @A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA+GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

fastp could offer a parameter to chose the “+” 、“_” or others.

sfchen commented 3 years ago

Hi, did you mean 

@A00153:435:HNGTVDSXX:1:1101:3712:1000:GCTGTCA+GTCCTCT 1:N:0:GAATTCGT+TTATGAGT

was created by bcl2fastq?