OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
MIT License
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zlib version #190

Open chendongo opened 4 years ago

chendongo commented 4 years ago

hi: i try to zlib 1.2.8 or zlib 1.2.11 in order to make, but it had a same question

so, please tell me what zlib version Thanks!

tmlreporter.o ./obj/jsonreporter.o ./obj/main.o ./obj/nucleotidetree.o ./obj/options.o ./obj/overlapanalysis.o ./obj/peprocessor.o ./obj/polyx.o ./obj/processor.o ./obj/read.o ./obj/seprocessor.o ./obj/sequence.o ./obj/stats.o ./obj/threadconfig.o ./obj/umiprocessor.o ./obj/unittest.o ./obj/writer.o ./obj/writerthread.o -o fastp -lz -lpthread -llber ./obj/fastqreader.o: In function FastqReader::getBytes(unsigned long&, unsigned long&)': /TJNAS01/CANCER/RD/TEST/chendongdong/fastp/fastp/src/fastqreader.cpp:70: undefined reference togzoffset' ./obj/writer.o: In function Writer::init()': /TJNAS01/CANCER/RD/TEST/chendongdong/fastp/fastp/src/writer.cpp:43: undefined reference togzbuffer' collect2: error: ld returned 1 exit status make: *** [fastp] Error 1

sfchen commented 4 years ago

Your zlib version should be too old.

chendongo commented 4 years ago

i know that zlib version can be too old, so i ask you what should use zlib version? i will update it

sfchen commented 4 years ago

Just update to the newest version