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OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
MIT License
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Feature Request: Filter polyX #268

Open tuandn8 opened 4 years ago

tuandn8 commented 4 years ago

We use NovaSeq to sequencing and have polyG problem. Now we want to remove all reads in 2 paired-end files which has polyG length larger than such as 50 bases.

sfchen commented 4 years ago

PolyG removing is enabled by default for NovaSeq data, have you try it?

tuandn8 commented 4 years ago

No, I want to remove all reads which have PolyG lengh larger than 50 bases, not trimming like here polyg tail trimming

alsmnn commented 3 years ago

+1 for filtering of whole read instead of trimming.