fastp trim polyG is not working when the data is large

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MIT License

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fastp trim polyG is not working when the data is large #464

Open MinBio opened 1 year ago

MinBio commented 1 year ago

I tested the same command with different two datasets, polyG still remains if the data is large (i tested 60M SE reads). polyG is still there and not be trimmed. fastp --in1 test_1.gz -g --poly_g_min_len=4 --out1 test_fp_1.gz

Any suggestions?

Thank you

onurcanbektas commented 8 months ago

I confirm - polyG is not working.

leone93 commented 4 months ago

yeah, also for me is not working (version 0.23.4)