Order of operations - documentation

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MIT License

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Open roni-fultheim opened 1 year ago

roni-fultheim commented 1 year ago

Hi,

Is it possible to add a section documenting order of operations? For example - is deduplication carried out before or after filtering\trimming?

Thank you

jan-glx commented 1 year ago

See also #411

roni-fultheim commented 1 year ago

Still an open question, we would be happy for an answer or documentation. thank you