Different adaptors detected in paired reads

OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

MIT License

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Different adaptors detected in paired reads #502

Open sofiapuvogelvittini opened 1 year ago

sofiapuvogelvittini commented 1 year ago

Hi, may I ask if it is normal (correct) to detect different adaptors sequence in the paired reads? (attached a picture with the example) Thanks for your help! fastp.pdf

kaeaton commented 1 year ago

If they're paired reads off an Illumina machine, then yes, that's correct. See bullet 5: https://github.com/OpenGene/fastp#adapters

sofiapuvogelvittini commented 1 year ago

Yes they are. Thank you very much!