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OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
MIT License
1.95k stars 334 forks source link

Store duplicate reads #549

Open johnw2358 opened 8 months ago

johnw2358 commented 8 months ago

We would like to reconstruct the input fastq from fastp output. It would be helpful we could store duplicate reads as output, similar to --failed_out for filtered reads.