OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
MIT License
1.94k stars 334 forks source link

few options throw 'undefined error' -reg #559

Open parima678 opened 7 months ago

parima678 commented 7 months ago

Thanks for this useful tool. While using this tool, it gave an "undefined" error while using the following four options (when excluded, it worked) and these were not listed in the set of options that it showed. Any mistake from my side on its usage? If so, what is the procedure to enable these options, please help out.
--unpaired1 = "file_R1.fastq.gz" --unpaired2 = "file_R2.fastq.gz" --failed_out = "fail.fastq.gz" --dont_overwrite