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Community nodes for Thermo Proteome Discoverer
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RNPxl: also use PD-style protein accession formatting #10

Open hannesveit opened 8 years ago

hannesveit commented 8 years ago

Use the PD notation, e.g., "P20053" instead of "sp|P20053|PRP4_YEAST" (see issue #8)

Unfortunately, the workaround from issue #8 doesn't work here, as PD does not perform the search on its own and hence TargetProteins is empty. It is unclear what the exact parsing rules are that PD internally applies to the "original" accession strings from the FASTA file.

Thus, for now it is probably safer to stick with the original FASTA accessions.