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OpenMS / THIRDPARTY

External binary dependencies (e.g. search engine binaries) packaged in installers
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Sirius LIbraries #19

Closed lukaszimmermann closed 7 years ago

lukaszimmermann commented 7 years ago

The sirius executable script required the libraries located in THIRDPARTY/All/Sirius/lib These are currently not included in the CLASSPATH for Sirius, so the sirius script will not work. I have to check how the libraries in the All directory can be included in the sirius script. I think it would be best to just merge the contents of the THIRDPARTY/All/Sirius/lib and the platform-specific lib dir upon deployment, but I do not know if this is possible. (It might be the case that the dir contents are already merged when installed, then I would not be aware of it)

oliveralka commented 7 years ago

Not sure about that. If we know how the flat folder structure looks like we could alter the scripts for Linux and OsX and see if it is running. 1) look if libs are in the same folder (flat) - not sure about the folder structure. 2) if not look at specific path THIRDPARTY/All/Sirius/lib If that works we can ask the Sirius-guys if they could add the changes to the OpenMS THIRPARTY Sirius build for Linux/OsX & windows.

From: CLASSPATH="$APP_HOME/../../../All/Sirius/lib/*:${GUROBI_HOME}/lib/gurobi.jar" To: CLASSPATH="$APP_HOME:$APP_HOME/../../../All/Sirius/lib/*:${GUROBI_HOME}/lib/gurobi.jar"

timosachsenberg commented 7 years ago

is this now fixed?

lukaszimmermann commented 7 years ago

yes