Closed axelwalter closed 2 years ago
What happened with plotly?
I think it would be a cool showcase. You just forgot to import px
I removed it because this would be the only place where plotly is used, since we do everything else with matplotlib. Do you think it is better to keep that?
Hmm ok. We could also have a separate section on interactive plots and show an example with plotly.
No strong opinion. I see your point.
Did you show drawn compounds in the hover boxes?
Yes, the reason why I chose plotly in the first place is interactivity in the browser and notebooks. Maybe that is possible with something like mpld3 (https://mpld3.github.io/index.html). I like the idea with interactive plots so we should keep plotly in mind.
I mean plotly should definitely work in jupyter. With an extension, you can even interactively change the layout.
The compound names were passed in the hover_name
argument to the scatter plot.
SMILES or formula?
Only the names. In the result df all possible compound names are attached to a feature, this list was shown on hover.
is this one working and done?
yes it's working
Plotting consensus maps before and after alignment with matplotlib according to the map alignment tutorial.