add example how protein ids are linked to peptide ids based on the getIdentifier() function

[rahul799]

When I am printing

print(peptide_id.getIdentifier())
print(protein_id.getIdentifier())

am getting same output IdentificationRun1 in both the cases. Is this the link you are talking about?

[timosachsenberg]

Hi Rahul.

Exactly. But we need to document somewhere more prominent that this is needed to link peptides to proteins. Otherwise, if this link is not establised some algorithms fail.

[rahul799]

Should I add it somewhere here https://pyopenms.readthedocs.io/en/latest/datastructures_id.html ? Maybe as a note?

[timosachsenberg]

that would be great. maybe in the very beginning before https://pyopenms.readthedocs.io/en/latest/datastructures_id.html#proteinidentification

[rahul799]

Ok. I will raise a PR soon.