This fixes some of the failing notebooks as mentioned in #299. However, there is still an issue in the peptide search tutorial that needs to be solved. At the end in the FDR section the IdXMLFile can not be stored because of invalid protein references.
This fixes some of the failing notebooks as mentioned in #299. However, there is still an issue in the peptide search tutorial that needs to be solved. At the end in the FDR section the IdXMLFile can not be stored because of invalid protein references.