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OpenMendel / SnpArrays.jl

Compressed storage for SNP data
https://openmendel.github.io/SnpArrays.jl/latest
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Cannot update SnpArrays #78

Closed biona001 closed 4 years ago

biona001 commented 4 years ago

I get an invalid version range: ">= 2020"

$ julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.5.0 (2020-08-01)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(@v1.5) pkg> update SnpArrays
   Updating registry at `~/.julia/registries/General`
   Updating git-repo `https://github.com/JuliaRegistries/General.git`
   Updating git-repo `https://github.com/OpenMendel/SnpArrays.jl.git`
ERROR: ArgumentError: invalid version range: ">= 2020"
Stacktrace:
 [1] Pkg.Types.VersionRange(::String) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/versions.jl:136
 [2] VersionSpec at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/versions.jl:219 [inlined]
 [3] load_package_data(::Type{Pkg.Types.VersionSpec}, ::String, ::Array{VersionNumber,1}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:185
 [4] deps_graph(::Pkg.Types.Context, ::Dict{Base.UUID,String}, ::Dict{Base.UUID,Pkg.Types.VersionSpec}, ::Dict{Base.UUID,Pkg.Resolve.Fixed}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:459
 [5] resolve_versions!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:367
 [6] up(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}, ::Pkg.Types.UpgradeLevel) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1215
 [7] up(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; level::Pkg.Types.UpgradeLevel, mode::Pkg.Types.PackageMode, update_registry::Bool, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:246
 [8] up at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:222 [inlined]
 [9] #up#37 at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67 [inlined]
 [10] up(::Array{Pkg.Types.PackageSpec,1}) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:67
 [11] do_cmd!(::Pkg.REPLMode.Command, ::REPL.LineEditREPL) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/REPLMode/REPLMode.jl:404
 [12] do_cmd(::REPL.LineEditREPL, ::String; do_rethrow::Bool) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/REPLMode/REPLMode.jl:382
 [13] do_cmd at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/REPLMode/REPLMode.jl:377 [inlined]
 [14] (::Pkg.REPLMode.var"#24#27"{REPL.LineEditREPL,REPL.LineEdit.Prompt})(::REPL.LineEdit.MIState, ::Base.GenericIOBuffer{Array{UInt8,1}}, ::Bool) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/Pkg/src/REPLMode/REPLMode.jl:546
 [15] #invokelatest#1 at ./essentials.jl:710 [inlined]
 [16] invokelatest at ./essentials.jl:709 [inlined]
 [17] run_interface(::REPL.Terminals.TextTerminal, ::REPL.LineEdit.ModalInterface, ::REPL.LineEdit.MIState) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/REPL/src/LineEdit.jl:2355
 [18] run_frontend(::REPL.LineEditREPL, ::REPL.REPLBackendRef) at /Users/julia/buildbot/worker/package_macos64/build/usr/share/julia/stdlib/v1.5/REPL/src/REPL.jl:1143
 [19] (::REPL.var"#38#42"{REPL.LineEditREPL,REPL.REPLBackendRef})() at ./task.jl:356
kose-y commented 4 years ago

Could you share the output of versioninfo() please?

kose-y commented 4 years ago

... and the output of ] status?

I cannot reproduce your issue. Completely removing SnpArrays and reinstalling it might help.

biona001 commented 4 years ago

I can't reproduce the problem anymore... I was having that issue on 2 machines yesterday, but somehow I can't reproduce it on either today. Oh well.... sorry for the inconvenience