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OpenMendel / SnpArrays.jl

Compressed storage for SNP data
https://openmendel.github.io/SnpArrays.jl/latest
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Drop dependency on GeneticVariation.jl in favor of VariantCallFormat.jl #86

Closed biona001 closed 3 years ago

biona001 commented 3 years ago

GeneticVariation.jl is no longer maintained, and it has a bunch of stringent package requirements which make installing SnpArrays.jl alongside VCFTools.jl a complete nightmare.

This PR drops support for GeneticVariation.jl in favor of VariantCallFormat.jl which is essentially the same package, but with properly updated package versions. Installing both SnpArrays.jl and VCFTools.jl should be straightforward now.

coveralls commented 3 years ago

Coverage Status

Coverage remained the same at 87.186% when pulling 528f2f0b632e83eca5084157f08542bef090f54f on develop into 17678244f02ad51aa65e01495862045bfe0c2a5a on master.

kose-y commented 3 years ago

Looks good to me. Thanks!