Closed asyakhl closed 11 months ago
Currently using this code as a fix for ppqt rule to run the chrom-seek pipeline, but need to find a more straightforward solution.
if paired_end: extensionsPPQT={"sorted": "bam", "Q5DD":"bam"} else: extensionsPPQT= {"sorted": "bam", "tagAlign": "gz", "Q5DD": "tagAlign.gz"}
completed with 0ea11a6 commit
Currently using this code as a fix for ppqt rule to run the chrom-seek pipeline, but need to find a more straightforward solution.